Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G235300.4 | Wheat | nucleus | 98.41 | 98.51 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 98.3 | 98.3 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 95.12 | 96.14 |
| Zm00001d029743_P001 | Maize | cytosol | 11.57 | 94.78 |
| Os02t0639000-01 | Rice | cytosol | 85.14 | 85.32 |
| EES05486 | Sorghum | cytosol | 83.12 | 83.83 |
| Zm00001d017373_P001 | Maize | nucleus | 81.32 | 79.63 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 78.34 | 78.76 |
| GSMUA_Achr11P... | Banana | cytosol | 2.97 | 71.79 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 69.53 | 69.02 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 60.19 | 59.75 |
| GSMUA_Achr11P... | Banana | nucleus | 58.6 | 59.55 |
| PGSC0003DMT400057635 | Potato | nucleus | 51.27 | 54.82 |
| Solyc02g078550.2.1 | Tomato | nucleus | 54.88 | 54.19 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 45.12 | 53.93 |
| KRH50009 | Soybean | nucleus | 54.67 | 53.87 |
| KRH20483 | Soybean | nucleus | 54.67 | 53.65 |
| GSMUA_Achr11P... | Banana | extracellular | 10.19 | 52.46 |
| KRH10835 | Soybean | nucleus | 52.87 | 51.98 |
| KRH21480 | Soybean | nucleus | 52.23 | 51.25 |
| CDX76438 | Canola | cytosol | 45.22 | 50.3 |
| Bra020905.1-P | Field mustard | cytosol | 45.22 | 50.3 |
| CDY31421 | Canola | cytosol | 44.69 | 50.24 |
| CDX98696 | Canola | nucleus | 49.47 | 50.0 |
| Bra038764.1-P | Field mustard | nucleus | 49.89 | 49.63 |
| AT4G21670.1 | Thale cress | nucleus | 50.32 | 49.02 |
| CDX94046 | Canola | nucleus | 49.47 | 49.0 |
| CDX79083 | Canola | nucleus | 42.57 | 46.68 |
| Bra013546.1-P | Field mustard | nucleus | 41.83 | 44.87 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 7.32 | 43.12 |
| TraesCS3B01G401900.2 | Wheat | mitochondrion | 34.29 | 42.95 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G264000.3 | EnsemblPlantsGene:TraesCS6B01G264000 | Gene3D:3.30.160.20 | InterPro:FCP1_dom | InterPro:HAD-like_sf | InterPro:IPR004274 |
| InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF11 | PFAM:PF00035 | PFAM:PF03031 |
| PFscan:PS50137 | PFscan:PS50969 | SEG:seg | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 |
| SUPFAM:SSF56784 | TIGR:cd00048 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | : | : |
Description
No Description!
Coordinates
chr6B:+:475651947..475660872
Molecular Weight (calculated)
104655.0 Da
IEP (calculated)
6.031
GRAVY (calculated)
-0.445
Length
942 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSMVYYGN TSIGEVEVWP KGDTNLGAAA WAREIRVDRL SPPSERCLPL AVMHTVAVGA RCLVMESRPP KAADEPPPPL VAMHAACLRD NKTAVVPLGE
101: EELHLVAMTS GRNLTNHACF WGYKVPFGLY NSCLTMLNLR CLGIVFDLDE TLIVANTTRT FEDRIDSLQR KLSNETDPQR MNGMLAEIKR YQDDRSILKQ
201: YIEGDQVYDD GKMYKVQPEI VPPLSDNHQS LTRPVIRLQE KNIILTRINP LIRDTSVLVR LRPAWEDLRS YLIARGRKRF EVYVCTMAER DYALEMWRLL
301: DPDSRLINSV QLSDRMVCVK SGLKKSLLNV FHDRSCHPGM ALVIDDRLKV WDEKDQSRVH VVPAFTPYYA PQAEANCSIP VLCVARNVAC NVRGGFFKDF
401: DEGLLPRITS VLYEDEIQDI SSAPDVGNYL ISEDENVAVV NGNRDSLAFD GMADAEGERR MKEASGSCSV LNPTMANMVM PVAPSQSFVP SSVAPFAPPL
501: GMMPLSNNQV PPPVFSQPVV QPVVLDPLQA SPGREEGEVP ESELDPDTRR RLLILQHGQD TRDPTPPLPA VPPAQVSVPP VQSHGNWFPV EDGIGMNSNN
601: LNRGSAGFPS ESDTMHYDKK QPPQPSYFHG GDNNPVSSDR FSYQSQRFPS QVTHTEDHRM LQNHAPPRYR SFPGQRDNLI ESGQSYARNV GTSVGILEEI
701: ALKSGSKVEY RSKLCDTAEL QFSIEVWIVG EKVGEGIGSS RKEAQRQAAE ISLRNLANKY LLSDPNKMTD VNEDGFGSNP NFFGYSENTR NDILPVASTS
801: EESRFTKTGE NNSRITGGSI AALKQLMCEN ILQCTVEGYN LVFQARPSPL DGSGGKETYA QVEVGGQTLG KGVGITWEEA KLQAADEALG TLRSMLGQLA
901: QKRSSSPRSL APNYNKRFKP DFPRAVQRPP YGRYSRIEGH VP
101: EELHLVAMTS GRNLTNHACF WGYKVPFGLY NSCLTMLNLR CLGIVFDLDE TLIVANTTRT FEDRIDSLQR KLSNETDPQR MNGMLAEIKR YQDDRSILKQ
201: YIEGDQVYDD GKMYKVQPEI VPPLSDNHQS LTRPVIRLQE KNIILTRINP LIRDTSVLVR LRPAWEDLRS YLIARGRKRF EVYVCTMAER DYALEMWRLL
301: DPDSRLINSV QLSDRMVCVK SGLKKSLLNV FHDRSCHPGM ALVIDDRLKV WDEKDQSRVH VVPAFTPYYA PQAEANCSIP VLCVARNVAC NVRGGFFKDF
401: DEGLLPRITS VLYEDEIQDI SSAPDVGNYL ISEDENVAVV NGNRDSLAFD GMADAEGERR MKEASGSCSV LNPTMANMVM PVAPSQSFVP SSVAPFAPPL
501: GMMPLSNNQV PPPVFSQPVV QPVVLDPLQA SPGREEGEVP ESELDPDTRR RLLILQHGQD TRDPTPPLPA VPPAQVSVPP VQSHGNWFPV EDGIGMNSNN
601: LNRGSAGFPS ESDTMHYDKK QPPQPSYFHG GDNNPVSSDR FSYQSQRFPS QVTHTEDHRM LQNHAPPRYR SFPGQRDNLI ESGQSYARNV GTSVGILEEI
701: ALKSGSKVEY RSKLCDTAEL QFSIEVWIVG EKVGEGIGSS RKEAQRQAAE ISLRNLANKY LLSDPNKMTD VNEDGFGSNP NFFGYSENTR NDILPVASTS
801: EESRFTKTGE NNSRITGGSI AALKQLMCEN ILQCTVEGYN LVFQARPSPL DGSGGKETYA QVEVGGQTLG KGVGITWEEA KLQAADEALG TLRSMLGQLA
901: QKRSSSPRSL APNYNKRFKP DFPRAVQRPP YGRYSRIEGH VP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.