Factsheet for TraesCS7A01G423200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS4A01G180400.1
TraesCS4D01G132400.1
TraesCS5A01G149400.2
TraesCS5B01G148100.2
TraesCS5D01G143500.2
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	TraesCS4A01G180400.1	AT1G09700.1	23141542
AT2G27100.1	TraesCS4D01G132400.1	AT1G09700.1	23141542
AT2G27100.1	TraesCS5A01G149400.2	AT1G09700.1	23141542
AT2G27100.1	TraesCS5B01G148100.2	AT1G09700.1	23141542
AT2G27100.1	TraesCS5D01G143500.2	AT1G09700.1	23141542
AT2G27100.1	TraesCS2A01G373400.3	AT4G21670.1	23141542
AT2G27100.1	TraesCS2B01G390500.3	AT4G21670.1	23141542
AT2G27100.1	TraesCS2D01G369600.4	AT4G21670.1	23141542
AT2G27100.1	TraesCS6A01G235300.4	AT4G21670.1	23141542
AT2G27100.1	TraesCS6B01G264000.3	AT4G21670.1	23141542
AT2G27100.1	TraesCS6D01G218000.3	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G416100.1	Wheat	nucleus	99.0	99.0
TraesCS7B01G323700.2	Wheat	nucleus	95.57	95.57
HORVU7Hr1G097860.2	Barley	plastid	91.0	91.92
EER90312	Sorghum	nucleus	74.86	73.49
Os06t0698859-01	Rice	nucleus	74.43	72.06
Zm00001d036495_P001	Maize	nucleus	72.71	70.5
Zm00001d014655_P001	Maize	nucleus, plastid	74.43	70.22
TraesCS6A01G119000.1	Wheat	nucleus	46.29	64.8
VIT_00s0220g00050.t01	Wine grape	cytosol	4.43	63.27
VIT_13s0047g00310.t01	Wine grape	nucleus	49.0	58.53
KRH56284	Soybean	endoplasmic reticulum	57.14	56.02
TraesCS7A01G254300.1	Wheat	nucleus	51.43	55.99
KRH62750	Soybean	nucleus	56.0	55.13
VIT_06s0009g01570.t01	Wine grape	nucleus	57.43	54.69
KRH44717	Soybean	nucleus	55.71	54.39
CDX77068	Canola	nucleus	52.86	53.62
Bra034322.1-P	Field mustard	nucleus	53.0	53.61
AT2G27100.1	Thale cress	nucleus	55.14	53.61
CDX71472	Canola	nucleus	53.71	53.49
CDY04478	Canola	nucleus	53.57	52.82
Bra012034.1-P	Field mustard	nucleus	53.57	52.82
Solyc01g009090.2.1	Tomato	nucleus	56.0	52.41
GSMUA_Achr5P22680_001	Banana	extracellular	12.29	44.56

Protein Annotations

EnsemblPlants:TraesCS7A01G423200.1	EnsemblPlantsGene:TraesCS7A01G423200	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:Arsenite-R_2
InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	PFAM:PF04959
PFAM:PF12066	ScanProsite:PS00028	SEG:seg	MapMan:15.5.15	MapMan:16.10.2.1.3	:

Description

No Description!

Coordinates

chr7A:+:615335899..615342718

Molecular Weight (calculated)

77830.9 Da

IEP (calculated)

9.132

GRAVY (calculated)

-1.054

Length

700 amino acids

Sequence
(BLAST)

001: MADVVDPSPG APRPLPPPPD SPSPEDRPVP LPPPPPPPPG GPPPTRKRSR SPPRPSLPPP PPIGSSRPER IRDRDRRGSR SPPPRRRHSP PSRRSPSPPF
101: KRSRRDDGYD RRGGRGSPPP RYDRGGGRGG YDDDRHHGRH RASDWPDSRF GAPNDGPGNT QREGLMTYKQ FIQVLEDDVS PAEAESRYQE YKTEYITTQK
201: RAYFDLHKNE DWLKDKYHPT NLLSVIERRN ERCKVVAKDF FLDLQNGTLD LGPGIIASAA NKSENGNDGN SEDDADGDRR RKQSRGSSKE TDPLSAAPKA
301: HPVSSEPRRI QTDIERTLGL VRRLDTEKGI QGNVLSSGDH EKSDVDKSHM GSMGPIVIVR GLTTVKGLEG VELLDTLLTY LWRIHGVDYY GMSETNEAKG
401: LRHVRTDNKT PSTTNINAAD WEKKLDTYWQ ERLTGQDPMV ILTAKDKIDA AAAEVLEPHV RKIRDEKYGW KYGCGAKGCT KLFHAPEFVY KHLRLKHPEI
501: VLEVTSNLRE DIYSQNYMSD PNAPGGTPVM QQSAADKSRR RSDNGMDNRL RYDRGNRREY DRADRDGGRH GRGDGSPSRD GPDDQMFDSF RGRGSNAPFS
601: AEFPAPPILM PVPGAGPLGP FVPAPPEIAM HMLREQGPSP FEPNGGPHGN SGVLGSMMGG GPAPIIAMPP SFHHDPRRLR SYNDLDAPDE EVTVLDYRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.