CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009
KRH52961
KRH62246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	KRH52961	AT1G09700.1	23141542
AT2G27100.1	KRH62246	AT1G09700.1	23141542
AT2G27100.1	KRH10835	AT4G21670.1	23141542
AT2G27100.1	KRH20483	AT4G21670.1	23141542
AT2G27100.1	KRH21480	AT4G21670.1	23141542
AT2G27100.1	KRH50009	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56284	Soybean	endoplasmic reticulum	93.25	92.86
KRH44717	Soybean	nucleus	77.5	76.85
VIT_13s0047g00310.t01	Wine grape	nucleus	57.95	70.31
GSMUA_Achr7P19610_001	Banana	nucleus	52.32	68.63
GSMUA_Achr6P01800_001	Banana	nucleus	51.9	68.21
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	39.38	61.4
HORVU7Hr1G052570.1	Barley	nucleus	44.59	60.15
CDX77068	Canola	nucleus	57.38	59.13
Bra034322.1-P	Field mustard	nucleus	57.52	59.1
Solyc01g009090.2.1	Tomato	nucleus	62.03	58.96
AT2G27100.1	Thale cress	nucleus	59.49	58.75
HORVU0Hr1G020790.1	Barley	nucleus	36.43	58.2
GSMUA_Achr10P...	Banana	nucleus	59.63	57.77
TraesCS6A01G119000.1	Wheat	nucleus	40.23	57.2
CDX71472	Canola	nucleus	56.26	56.9
HORVU7Hr1G097860.2	Barley	plastid	55.27	56.71
CDY04478	Canola	nucleus	56.26	56.34
Bra012034.1-P	Field mustard	nucleus	56.26	56.34
TraesCS7D01G416100.1	Wheat	nucleus	55.13	56.0
TraesCS7A01G423200.1	Wheat	nucleus	55.13	56.0
Zm00001d047626_P001	Maize	cytosol	8.58	55.96
TraesCS7B01G323700.2	Wheat	nucleus	54.43	55.29
HORVU6Hr1G021620.2	Barley	nucleus	41.49	55.14
Zm00001d049767_P001	Maize	extracellular, nucleus	48.1	54.46
EES15338	Sorghum	nucleus	48.38	53.58
EER90312	Sorghum	nucleus	53.59	53.44
TraesCS7B01G150500.1	Wheat	nucleus	48.1	53.19
TraesCS7A01G254300.1	Wheat	nucleus	47.96	53.03
TraesCS7D01G252800.1	Wheat	nucleus	47.96	53.03
Os06t0698859-01	Rice	nucleus	53.87	52.97
Os08t0517300-01	Rice	plastid	48.1	52.86
Zm00001d036495_P001	Maize	nucleus	52.88	52.08
Zm00001d014655_P001	Maize	nucleus, plastid	54.01	51.75
Zm00001d046965_P001	Maize	nucleus	19.83	50.72
Zm00001d031542_P001	Maize	nucleus	45.85	48.8
GSMUA_Achr5P22680_001	Banana	extracellular	13.22	48.7
Zm00001d006696_P001	Maize	nucleus	15.75	47.26
Os02t0149600-01	Rice	nucleus	44.16	47.15
Zm00001d046814_P001	Maize	cytosol	11.53	44.09
TraesCS6B01G147000.1	Wheat	nucleus	45.85	43.58
TraesCS6D01G108900.1	Wheat	nucleus	44.3	41.78
Zm00001d018785_P001	Maize	cytosol	15.75	40.73
KXG29470	Sorghum	nucleus, plastid	42.62	37.32

Protein Annotations

EMBL:ACUP02002353	EnsemblPlants:KRH62750	EnsemblPlantsGene:GLYMA_04G128800	EntrezGene:100811300	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165
PANTHER:PTHR13165:SF2	PFAM:PF04959	PFAM:PF12066	ProteinID:KRH62750	ProteinID:KRH62750.1	ScanProsite:PS00028
SEG:seg	UniParc:UPI000233A82A	UniProt:K7KJV0	MapMan:15.5.15	MapMan:16.10.2.1.3	:

Description

hypothetical protein

Coordinates

chr4:-:17927529..17936517

Molecular Weight (calculated)

79898.0 Da

IEP (calculated)

7.838

GRAVY (calculated)

-1.075

Length

711 amino acids

Sequence
(BLAST)

001: MAEVINNMPP ESLDHDQSPS ASAPPPPAAS SSAADDLPPP PLPLPPRRRD RRDDRDFDRH PNRSRDYYDR DRDFKRRRSP SPGYRDRRYS PPPPSRRSPP
101: PYKRSRRGSP RGGAYVPDDR FGYDYSGGYE RGAGGRTGFA DEKSYGRLAH RSAGGYHNGI SDVDNSRGYA DLPSGGAQRE GLMSYKQFIQ ELEDDVLPAE
201: AERRYQEYKS EYISTQKRAY FNAHKDEEWL KDKYHPTNLL TVIERRNENA RRLAKDFLLD LQSGTLDLNP GLNSTSSGKS GQASEPNSEE ETDGKRRRHG
301: RGPNKDNDFS AAPKAHTISS EPRRIQTDIQ QAQAVVRKLD REKGIDDNIL CTSDHNKNDD KAHSGSVGPI VIVRGLTSVK GLEGVELLDT LITYLWRIHG
401: VDYYGMIETN EAKGFRYVRP EGTGHEETRK SGSDWEKKLD SFWQGRLNGQ DPLEVMTAKE KIDAAATDVL DPHVRKIRDE KYGWKYGCGA KGCTKLFHAA
501: EFVHKHLKLK HPELVMELTS KLREDLYFQN YMNDPDAPGG TPVMQQPQKD RPLKRRLGGL EGRLKDDRGN RRDQDRSDRI NGDRPDGSPS HERQMGNHDE
601: AMYDAYGGLG VPQFTSDMAP PPVLMPVPGA GPLGPFVPAP PEVAMQMFRE QGGPSSYDAS GRKIRSGPHM GGPAPIIAVP PSFRPDPRQM RSYQDLDAPE
701: DEVTVIDYRS L

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.