Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 3
- mitochondrion 1
- plastid 1
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19610_001 | Banana | nucleus | 74.12 | 62.36 |
| GSMUA_Achr6P01800_001 | Banana | nucleus | 73.9 | 62.29 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 62.5 | 48.63 |
| GSMUA_Achr10P... | Banana | nucleus | 75.88 | 47.14 |
| KRH62750 | Soybean | nucleus | 61.4 | 39.38 |
| KRH56284 | Soybean | endoplasmic reticulum | 61.62 | 39.36 |
| Zm00001d018785_P001 | Maize | cytosol | 23.25 | 38.55 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 62.06 | 38.5 |
| KRH44717 | Soybean | nucleus | 60.09 | 38.21 |
| AT2G27100.1 | Thale cress | nucleus | 60.09 | 38.06 |
| CDX77068 | Canola | nucleus | 57.02 | 37.68 |
| Bra034322.1-P | Field mustard | nucleus | 57.02 | 37.57 |
| CDX71472 | Canola | nucleus | 56.14 | 36.42 |
| Solyc01g009090.2.1 | Tomato | nucleus | 58.55 | 35.7 |
| CDY04478 | Canola | nucleus | 55.26 | 35.49 |
| Bra012034.1-P | Field mustard | nucleus | 55.26 | 35.49 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 5.04 | 11.92 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 1.1 | 10.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P22670_001 | EnsemblPlants:GSMUA_Achr5T22670_001 | EnsemblPlantsGene:GSMUA_Achr5G22670_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Arsenite-R_2 | InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 |
| PFAM:PF04959 | PFAM:PF12066 | ScanProsite:PS00028 | UniParc:UPI000295741C | UniProt:M0T0U2 | MapMan:15.5.15 |
| MapMan:16.10.2.1.3 | : | : | : | : | : |
Description
Serrate RNA effector molecule [Source:GMGC_GENE;Acc:GSMUA_Achr5G22670_001]
Coordinates
chr5:+:24633183..24640368
Molecular Weight (calculated)
50513.3 Da
IEP (calculated)
6.570
GRAVY (calculated)
-0.452
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMVAVMIEL AREVEVGMGM KGLMVAICIV HQICLIQDMV VMVMALSLFK VNKDQSHIII ISCYSSRGGL MSYKQFIQEL EDDISPAEAE CRYKEYRSEY
101: ISTQKQAYFE AHKEEQWLKD KYHPTNLVAV IERRKEQARS IAKEFLLDLQ SGILDLGPGS TASSASKSGN GSEPNSEDEA GPSGKRRRHD RGPAKENELL
201: SATPKAHPVS SEPRRIQSDV EQAQALVRKL DIEKGIQDNV LSSSGHDKLD AEKSHGGSMG PIVIIRGLAT VKGLEGVELL DTLITYLWRV HGLDYYGMSE
301: ASEAKGLRHV RADNKTHDGT NASASDWEKK LDSFWLARLQ GQDPLETLTA KDKIDAAATE ALEPFVRKIR DEKYGWKYGC GAKGCTKLFH APEFVHKHLR
401: LKHPDLAIEL TSKVREDLYF QNYMNDPSAP GGTPVMQQSA SGGNGAEAVP IDGTAR
101: ISTQKQAYFE AHKEEQWLKD KYHPTNLVAV IERRKEQARS IAKEFLLDLQ SGILDLGPGS TASSASKSGN GSEPNSEDEA GPSGKRRRHD RGPAKENELL
201: SATPKAHPVS SEPRRIQSDV EQAQALVRKL DIEKGIQDNV LSSSGHDKLD AEKSHGGSMG PIVIIRGLAT VKGLEGVELL DTLITYLWRV HGLDYYGMSE
301: ASEAKGLRHV RADNKTHDGT NASASDWEKK LDSFWLARLQ GQDPLETLTA KDKIDAAATE ALEPFVRKIR DEKYGWKYGC GAKGCTKLFH APEFVHKHLR
401: LKHPDLAIEL TSKVREDLYF QNYMNDPSAP GGTPVMQQSA SGGNGAEAVP IDGTAR
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.