Factsheet for GSMUA_Achr8P16450_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr5P22670_001
GSMUA_Achr5P22680_001
GSMUA_Achr6P01800_001
GSMUA_Achr7P19610_001
GSMUA_Achr8P14120_001
GSMUA_Achr8P16450_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	GSMUA_Achr11P...	AT1G09700.1	15821876
AT1G09700.1	GSMUA_Achr8P16450_001	AT1G09700.1	15821876
AT1G09700.1	GSMUA_Achr10P...	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr5P22670_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr5P22680_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr6P01800_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr7P19610_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr11P...	AT4G21670.1	23141542
AT1G09700.1	GSMUA_Achr11P...	AT4G21670.1	23141542
AT1G09700.1	GSMUA_Achr11P...	AT4G21670.1	23141542
AT1G09700.1	GSMUA_Achr8P14120_001	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	53.06	51.07
Bra019999.1-P	Field mustard	plastid	30.0	39.42
CDX93488	Canola	plastid	30.0	39.27
OQU82704	Sorghum	cytosol, nucleus	35.56	38.91
CDY20678	Canola	cytosol	29.72	38.63
Bra030793.1-P	Field mustard	cytosol	29.72	38.49
CDX94957	Canola	cytosol, nucleus, plastid	29.44	37.46
CDY31070	Canola	endoplasmic reticulum, golgi	30.0	33.64
KRH52961	Soybean	nucleus	33.61	33.33
KRH62246	Soybean	nucleus	33.06	33.15
KXG22802	Sorghum	mitochondrion	38.33	31.94
Zm00001d005065_P002	Maize	cytosol	38.33	31.8
Os05t0307400-01	Rice	cytosol	38.33	31.58
Os11t0109900-01	Rice	cytosol	39.17	29.81
VIT_18s0001g07670.t01	Wine grape	nucleus	33.06	29.75
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	31.11	27.59
TraesCS4D01G132400.1	Wheat	cytosol	31.11	27.45
TraesCS4A01G180400.1	Wheat	cytosol	30.83	27.27
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	30.0	26.47
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	31.67	26.33
AT1G09700.1	Thale cress	plastid	30.28	26.01
TraesCS5D01G143500.2	Wheat	nucleus	35.83	24.43
TraesCS5B01G148100.2	Wheat	nucleus	35.83	24.34
TraesCS5A01G149400.2	Wheat	mitochondrion	35.83	23.2
HORVU5Hr1G047100.5	Barley	nucleus	35.28	22.16
GSMUA_Achr2P22850_001	Banana	cytosol	15.56	18.12
GSMUA_Achr7P01540_001	Banana	cytosol	11.67	15.61
Os12t0109900-02	Rice	cytosol	20.0	15.58
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	16.67	13.54
GSMUA_Achr4P21490_001	Banana	nucleus	14.72	13.49
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	16.11	12.86
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	16.39	12.55
GSMUA_Achr5P00420_001	Banana	nucleus	15.83	9.93

Protein Annotations

MapMan:16.10.2.1.2	Gene3D:3.30.160.20	InterPro:DRB	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr8G16450_001
EnsemblPlants:GSMUA_Achr8P16450_001	EnsemblPlants:GSMUA_Achr8T16450_001	InterPro:IPR014720	UniProt:M0TQZ8	PFAM:PF00035	PFscan:PS50137
PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	SMART:SM00358	SUPFAM:SSF54768	TMHMM:TMhelix	UniParc:UPI000295DCF5
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G16450_001]

Coordinates

chr8:-:14302446..14308772

Molecular Weight (calculated)

39792.3 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.168

Length

360 amino acids

Sequence
(BLAST)

001: MCRQELCRLR RLAGTIGILA LLLLLLRSKC DDGIDVLTHM KTFHLSAAPC TAGSSTEGVT AAAERGPGAT ERSGKEGILK VFLQLLFLEG QMNLEVVILR
101: EDTEKNKEKT SKKNPDDTKG VASCYVFKSR LQEYAQKVGI PTPVYQTLKE GPSHEPVFKS TVIVNNTRYD SLPGFFNRKA AEQSAAEIAL MEIHKSGLMT
201: ENMPTVREGK EVPNLLQEYA QKMNYAIPSD ICTKNSSGAT PFTCTVEIGG IQYIGAAART KKEAEIKAAR TALLAIQSQS QGGHRWCLAV HCPSRQKEVS
301: IEEQVLVGCY FQSTKYWAVS LLAIISCSSI YYSLLSKSRF QGTTCDKLLI WINMIMCERN

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.