Factsheet for VIT_18s0001g07670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0370g00040.t01
VIT_04s0023g00920.t01
VIT_06s0009g01570.t01
VIT_14s0068g01520.t01
VIT_18s0001g07670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	VIT_18s0001g07670.t01	AT1G09700.1	15821876
AT1G09700.1	VIT_06s0009g01570.t01	AT2G27100.1	23141542
AT1G09700.1	VIT_04s0023g00920.t01	AT3G03300.1	15821876
AT1G09700.1	VIT_00s0370g00040.t01	AT4G21670.1	23141542
AT1G09700.1	VIT_14s0068g01520.t01	AT5G41070.1	15821876
AT1G09700.1	VIT_14s0068g01520.t01	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019999.1-P	Field mustard	plastid	37.5	54.74
CDX93488	Canola	plastid	37.5	54.55
CDY20678	Canola	cytosol	36.75	53.07
Bra030793.1-P	Field mustard	cytosol	36.75	52.88
CDX94957	Canola	cytosol, nucleus, plastid	36.0	50.88
KRH52961	Soybean	nucleus	45.75	50.41
KRH62246	Soybean	nucleus	45.0	50.14
CDY31070	Canola	endoplasmic reticulum, golgi	36.75	45.79
OQU82704	Sorghum	cytosol, nucleus	33.25	40.43
GSMUA_Achr11P...	Banana	nucleus	37.5	40.11
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	39.25	38.67
AT1G09700.1	Thale cress	plastid	40.25	38.42
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	38.25	35.33
Os05t0307400-01	Rice	cytosol	38.25	35.01
VIT_08s0056g01550.t01	Wine grape	plastid	14.5	34.94
KXG22802	Sorghum	mitochondrion	36.75	34.03
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	29.75	33.06
Zm00001d005065_P002	Maize	cytosol	35.25	32.49
Os11t0109900-01	Rice	cytosol	37.25	31.5
TraesCS4A01G180400.1	Wheat	cytosol	31.75	31.2
TraesCS4D01G132400.1	Wheat	cytosol	31.75	31.13
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	31.25	30.64
TraesCS5D01G143500.2	Wheat	nucleus	38.0	28.79
TraesCS5B01G148100.2	Wheat	nucleus	38.0	28.68
TraesCS5A01G149400.2	Wheat	mitochondrion	38.25	27.52
HORVU5Hr1G047100.5	Barley	nucleus	38.0	26.53
VIT_14s0006g01440.t01	Wine grape	nucleus	18.25	21.92
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	16.5	15.98
VIT_14s0068g01520.t01	Wine grape	nucleus	17.75	14.76
Os12t0109900-02	Rice	cytosol	15.75	13.64
VIT_14s0030g01280.t01	Wine grape	nucleus	19.5	13.54
VIT_05s0020g01850.t01	Wine grape	nucleus	17.75	8.6

Protein Annotations

EntrezGene:100243781	wikigene:100243781	MapMan:16.10.2.1.2	Gene3D:3.30.160.20	UniProt:A5BNI8	EMBL:AM465666
ProteinID:CAN68128	ProteinID:CAN68128.1	ProteinID:CCB45664	ProteinID:CCB45664.1	InterPro:DRB	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009733	GO:GO:0009735	GO:GO:0009737
GO:GO:0009987	GO:GO:0010267	GO:GO:0010305	GO:GO:0010445	GO:GO:0010589	GO:GO:0016787
GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054	GO:GO:0035196	GO:GO:0035198
GO:GO:0035279	GO:GO:0040029	GO:GO:0042802	GO:GO:0090502	InterPro:IPR014720	EntrezGene:LOC100243781
wikigene:LOC100243781	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI000152176D	ArrayExpress:VIT_18s0001g07670	EnsemblPlantsGene:VIT_18s0001g07670	EnsemblPlants:VIT_18s0001g07670.t01	unigene:Vvi.16888
RefSeq:XP_002285663	RefSeq:XP_002285663.1	InterPro:dsRBD_dom	:	:	:

Description

No Description!

Coordinates

chr18:+:5920503..5929008

Molecular Weight (calculated)

42544.1 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.472

Length

400 amino acids

Sequence
(BLAST)

001: MSSNDGFAGV SNCYVFKSRL QEYAQKVGLP TPLYDTIKEG PPHVPSFKST VIVNDVRYDS LPGFSNRKAA EQSAAEVALV ELAKSGNMKE CISQPVHETG
101: LCKNLLQEYA QKMNYAIPMY VCQKDESPGR AASFSCTVEI GGIRYIGAAA RTKKEAEIKA ARTALLAIRA NTDGVGEKSI GNTQLTVIPG KKKGPESGNP
201: DEPAKALKPK KARFKTKGLR KKFPGNKVGN DQVEDTRGME VDIDNQVGSE LLQTDASMVQ VAESGLLSME SKENFEEEKS IVNQNGGDKT VAEGDPIPDI
301: IGNCQNGQAT ASDIKKTDHK APPELGISSM SPAEVLVSVA MEVNNVSEAG LVDSAIMNSS NEDQTEAASA AKDFKQMGAN EDDFKSNGAS ALGIVASNLG

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.