Factsheet for VIT_14s0030g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96921	Soybean	nucleus	49.48	52.97
KRH68665	Soybean	nucleus	48.61	51.95
VIT_08s0056g01550.t01	Wine grape	plastid	13.19	45.78
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	31.77	44.31
GSMUA_Achr5P00420_001	Banana	nucleus	39.06	39.2
Zm00001d024861_P007	Maize	nucleus	34.38	38.52
VIT_14s0068g01520.t01	Wine grape	nucleus	31.94	38.25
KXG21311	Sorghum	nucleus	36.63	36.82
Os05t0150400-01	Rice	cytosol, nucleus	37.85	36.15
TraesCS1A01G091200.2	Wheat	nucleus	35.07	35.44
TraesCS1B01G119000.1	Wheat	nucleus	35.42	35.29
TraesCS1D01G099700.1	Wheat	nucleus	34.9	35.2
HORVU1Hr1G021530.1	Barley	nucleus	35.07	34.83
VIT_05s0020g01850.t01	Wine grape	nucleus	44.79	31.23
VIT_14s0006g01440.t01	Wine grape	nucleus	12.15	21.02
VIT_18s0001g07670.t01	Wine grape	nucleus	13.54	19.5

Protein Annotations

EntrezGene:100245249	wikigene:100245249	Gene3D:3.30.160.20	MapMan:35.1	ProteinID:CCB58125	ProteinID:CCB58125.1
UniProt:F6HTW4	EMBL:FN596249	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR014720	EntrezGene:LOC100245249	wikigene:LOC100245249	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910
PANTHER:PTHR10910:SF142	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0002109E79	ArrayExpress:VIT_14s0030g01280	EnsemblPlantsGene:VIT_14s0030g01280
EnsemblPlants:VIT_14s0030g01280.t01	RefSeq:XP_002271134	RefSeq:XP_002271134.2	InterPro:dsRBD_dom	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:5801270..5815555

Molecular Weight (calculated)

64212.1 Da

IEP (calculated)

9.016

GRAVY (calculated)

-0.556

Length

576 amino acids

Sequence
(BLAST)

001: MDNVRIEFSS LFLYFLRDQR WAAYGMYKNQ LQELAQRSCF NLPSYSCIRE GPDHAPRFKA TVNFNGETFE SPSFCSTLRQ AEHAAAEVAL NTLANRGPSK
101: ALAARVLDET GVYKNLLQET AHRAGLNLPV YTTIRSGPGH VPVFSCTVEI AGMSFTGEAA KTKKQAQKNA AMTAWSALRK LSQRGSPSSP SVESECNEEQ
201: EQVIIARVLA SLRPSKSNNK QNDRQHGQQR SGSICRDSTP QTPISCSMQY QSTVDPSFFP EMAMYQMWQQ EQLAQLQNRL LALPVPLAPQ PSPHFFPFMQ
301: SMFRPDHCLY FPTEVQQPIT MGPRFSIAAS GSSFYLSNHL VPEPMRGRSM VTIQEIEEKT EERSEFSPSE VSVSPALGDN NTEAINQEPI QEDNKQNTEE
401: LGGKIATSVQ LERNQPGQFG WTSRRSVDSR LGPIEFQLQR PHGFDSSQSN PRPYHPPGLS SYRSSRPPST VAAPVMTRTG DPVSSVGLRP QNLANQMPAP
501: PRMRTGIPPY SFRPRPERMD FGRGPPRAMA PAVQIRTVVP VCSAPPARKI PRPSSKEMTS INFYSHVVLV LDNIYL

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.