Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0056g01550.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62800.1 | VIT_08s0056g01550.t01 | AT3G62800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16051 | Sorghum | cytosol | 41.57 | 34.85 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 53.61 | 30.9 |
| EER88251 | Sorghum | cytosol, mitochondrion, nucleus | 41.57 | 28.4 |
| Bra007702.1-P | Field mustard | nucleus | 51.81 | 26.06 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 38.55 | 26.02 |
| CDY11449 | Canola | nucleus | 51.81 | 25.98 |
| CDX76663 | Canola | cytosol | 51.2 | 25.37 |
| AT3G62800.1 | Thale cress | nucleus | 51.2 | 23.94 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 23.49 | 22.16 |
| KRH57881 | Soybean | nucleus | 57.83 | 19.05 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 47.59 | 17.91 |
| VIT_06s0004g02810.t01 | Wine grape | cytosol, nucleus, plastid | 43.98 | 17.68 |
| KXG33474 | Sorghum | mitochondrion | 46.39 | 15.28 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 43.98 | 15.18 |
| VIT_14s0006g01440.t01 | Wine grape | nucleus | 29.52 | 14.71 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 34.94 | 14.5 |
| VIT_14s0030g01280.t01 | Wine grape | nucleus | 45.78 | 13.19 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 40.96 | 11.91 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 38.55 | 11.74 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 39.76 | 10.89 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 39.76 | 10.87 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 39.16 | 10.73 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 39.16 | 10.73 |
| VIT_05s0020g01850.t01 | Wine grape | nucleus | 43.98 | 8.84 |
Protein Annotations
| ArrayExpress:VIT_08s0056g01550 | EMBL:FN595995 | EnsemblPlants:VIT_08s0056g01550.t01 | EnsemblPlantsGene:VIT_08s0056g01550 | Gene3D:3.30.160.20 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF114 | PFAM:PF00035 | PFscan:PS50137 | ProteinID:CCB56018 | ProteinID:CCB56018.1 | SMART:SM00358 |
| SUPFAM:SSF54768 | UniParc:UPI000210881E | UniProt:F6HMN6 | MapMan:16.10.1.4.1 | : | : |
Description
No Description!
Coordinates
chr8:-:2460960..2465551
Molecular Weight (calculated)
18918.7 Da
IEP (calculated)
7.656
GRAVY (calculated)
-0.475
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIWAANLEH IFPCMQHLYK TQLQTYAQKR NLPLPMYSFE SIGPSHNCRF KSKVTIEEQT YESPDFFPTL KDAEHAAAKL ALMSLSPAGF QEDDYGVYKN
101: LLQEMARKEG YQLPVYSTEK SGVSHMPTFL STVEIEGETF VGQKAKTKKL AEMNAAKAAY THLKER
101: LLQEMARKEG YQLPVYSTEK SGVSHMPTFL STVEIEGETF VGQKAKTKKL AEMNAAKAAY THLKER
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.