CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88251
EES16051
KXG33474

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	EER88251	AT3G62800.1	21798944
AT3G62800.1	EES16051	AT3G62800.1	21798944
AT3G62800.1	KXG33474	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88251	Sorghum	cytosol, mitochondrion, nucleus	83.84	68.31
VIT_08s0056g01550.t01	Wine grape	plastid	34.85	41.57
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	31.82	21.88
Bra007702.1-P	Field mustard	nucleus	33.33	20.0
CDY11449	Canola	nucleus	33.33	19.94
CDX76663	Canola	cytosol	33.33	19.7
AT3G62800.1	Thale cress	nucleus	31.31	17.46
KXG33474	Sorghum	mitochondrion	39.9	15.67
KRH57881	Soybean	nucleus	38.89	15.28
EES14943	Sorghum	nucleus	22.22	14.77
OQU82704	Sorghum	cytosol, nucleus	22.73	13.68
KXG38314	Sorghum	mitochondrion, nucleus	31.82	11.67
KXG22802	Sorghum	mitochondrion	25.25	11.57
KXG21311	Sorghum	nucleus	31.31	10.82
EES09107	Sorghum	cytosol	10.1	5.54

Protein Annotations

EnsemblPlants:EES16051	EnsemblPlantsGene:SORBI_3008G110000	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF114	PFAM:PF00035
PFscan:PS50137	ProteinID:EES16051	ProteinID:EES16051.1	RefSeq:XP_002442213.1	SEG:seg	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI0001A883A8	UniProt:C5YP46	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:51149229..51151387

Molecular Weight (calculated)

22021.2 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.583

Length

198 amino acids

Sequence
(BLAST)

001: MKCAPAIARV CACPDTSGKK WKARRDHVVK ESKTDFKTQL SVYAQKLSKV PPLYKHIQEG PAHAPRFNAE VTIDGQTFGR PELLYYKLKD AEAAAAEVAL
101: DLLPPIPPQE YTIPSLSYKN FIQEIAQKEG ISLPVYNTVP TNKENSTAYK SSVQIKGEIF EGEPGTSKKQ AEMNAAKIAY HHLALPELEG DDNERLDH

Best Arabidopsis Sequence Match ( AT3G62800.3 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.