CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052326_P001	Maize	cytosol	83.93	83.93
TraesCS5A01G149300.1	Wheat	cytosol, plastid	64.27	67.44
TraesCS5B01G148000.1	Wheat	plastid	63.71	66.86
KRH63090	Soybean	nucleus	6.93	16.03
KRH62980	Soybean	nucleus	8.31	15.08
VIT_14s0006g01440.t01	Wine grape	nucleus	9.42	10.21
EES16051	Sorghum	cytosol	5.54	10.1
KRH30959	Soybean	mitochondrion	7.48	9.78
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	5.26	9.6
OQU82704	Sorghum	cytosol, nucleus	8.59	9.42
GSMUA_Achr2P22850_001	Banana	cytosol	7.2	8.41
KRH01275	Soybean	nucleus	7.76	8.38
PGSC0003DMT400014406	Potato	nucleus	4.99	8.33
KXG22802	Sorghum	mitochondrion	9.7	8.1
KXG38314	Sorghum	mitochondrion, nucleus	11.91	7.96
EER88251	Sorghum	cytosol, mitochondrion, nucleus	5.26	7.82
PGSC0003DMT400088113	Potato	nucleus	3.6	7.56
EES14943	Sorghum	nucleus	6.09	7.38
KRH15123	Soybean	nucleus	9.14	7.19
KXG21311	Sorghum	nucleus	10.8	6.81
PGSC0003DMT400085647	Potato	cytosol, nucleus	4.99	6.79
KRH73012	Soybean	nucleus	4.43	5.48
KXG33474	Sorghum	mitochondrion	6.37	4.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:8079986	UniProt:C5Y329	EnsemblPlants:EES09107	ProteinID:EES09107
ProteinID:EES09107.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF927	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3005G008700	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001A8693E	RefSeq:XP_002450119.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:662276..663361

Molecular Weight (calculated)

37650.5 Da

IEP (calculated)

6.987

GRAVY (calculated)

0.170

Length

361 amino acids

Sequence
(BLAST)

001: MAGSRHSDAT DHQHRLLATL ARHGRFAAAA TLFCTAHRTT GALNALLAAL CCCSSRSPVL LRAAPAVLLR AAPHAAPDAA TFRILTSALC RAGQPSAAAD
101: VLRCMPPLLL DPDPRHCRAV LASLCRRAAR DALAFLDDMR RWGVPPGRPD HRAVVGALLR EGMHAEAYEV VAKRMDGDGV APGLPEFERL LRAFRDRGRL
201: DAVEEAFDEM LLRGIVPCAR VYGVYLGALC DGGDVAAARR MLGCMERAGC PPDAPTFGVV VAGCVAAGDV DAAREVVEEA VGRGLRWDAP SLSVLVAALR
301: AGGHLAPARP LLLDILRDGC CAAPVDAAAF ERLVGEGASC DGGEGLGADE AAGAVGETVP R

Best Arabidopsis Sequence Match ( AT2G38420.1 )
(BLAST)

001: MARSSSWHRM SNFMRKYRKI PHSSFKTKWN ENLKQKYAME ELRSNLLTDS ENASVMRTLL SSFQLHNCEP TPQAYRFVIK TLAKSSQLEN ISSVLYHLEV
101: SEKFDTPESI FRDVIAAYGF SGRIEEAIEV FFKIPNFRCV PSAYTLNALL LVLVRKRQSL ELVPEILVKA CRMGVRLEES TFGILIDALC RIGEVDCATE
201: LVRYMSQDSV IVDPRLYSRL LSSVCKHKDS SCFDVIGYLE DLRKTRFSPG LRDYTVVMRF LVEGGRGKEV VSVLNQMKCD RVEPDLVCYT IVLQGVIADE
301: DYPKADKLFD ELLLLGLAPD VYTYNVYING LCKQNDIEGA LKMMSSMNKL GSEPNVVTYN ILIKALVKAG DLSRAKTLWK EMETNGVNRN SHTFDIMISA
401: YIEVDEVVCA HGLLEEAFNM NVFVKSSRIE EVISRLCEKG LMDQAVELLA HLV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.