Factsheet for Zm00001d052326_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09107	Sorghum	cytosol	83.93	83.93
TraesCS5A01G149300.1	Wheat	cytosol, plastid	63.99	67.15
TraesCS5B01G148000.1	Wheat	plastid	63.71	66.86
KRH63090	Soybean	nucleus	6.09	14.1
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	13.02	13.28
KRH62980	Soybean	nucleus	7.2	13.07
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	6.09	11.11
VIT_14s0006g01440.t01	Wine grape	nucleus	9.7	10.51
KRH30959	Soybean	mitochondrion	8.03	10.51
PGSC0003DMT400014406	Potato	nucleus	5.82	9.72
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	13.57	9.42
Zm00001d024861_P007	Maize	nucleus	13.02	9.14
Zm00001d032679_P001	Maize	nucleus	13.02	9.13
GSMUA_Achr2P22850_001	Banana	cytosol	7.76	9.06
KRH01275	Soybean	nucleus	7.76	8.38
Zm00001d005065_P002	Maize	cytosol	9.97	8.29
PGSC0003DMT400088113	Potato	nucleus	3.88	8.14
Zm00001d022648_P001	Maize	mitochondrion, nucleus	5.54	8.13
Zm00001d032326_P002	Maize	cytosol, plastid	7.48	7.46
KRH15123	Soybean	nucleus	9.14	7.19
PGSC0003DMT400085647	Potato	cytosol, nucleus	5.26	7.17
KRH73012	Soybean	nucleus	4.43	5.48

Protein Annotations

EnsemblPlants:Zm00001d052326_P001	EnsemblPlants:Zm00001d052326_T001	EnsemblPlantsGene:Zm00001d052326	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535
PFscan:PS51375	ProteinID:AQK56950.1	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002218122	UniProt:K7U6A6
MapMan:35.2	:	:	:	:	:

Description

Double-stranded RNA-binding protein 1

Coordinates

chr4:-:187130986..187132071

Molecular Weight (calculated)

37873.0 Da

IEP (calculated)

7.904

GRAVY (calculated)

0.158

Length

361 amino acids

Sequence
(BLAST)

001: MGVGRRSEPR PDATGQHHHQ HRLLSTLARH GRFAAAATLF CTVHRTTGAL NALLAALCCS SRSSPTLLRA APAVLLRAAP HAAPDAATFR ILTAALCRAG
101: QPSAAADLIR CMPPLLLDPD PCHCRAVLAS LCRRGAPARD ALDFLDDMRR WGVPPARPDH HAVVGALLRE GMAAEAYEVV ARRMAADGVA PGLPEFEQLL
201: RAFRERGRLD AVEEAFDEML LRGLVPCARV YGVYLGALCD GGDLAAARRM LGCMERAGCP PDARAFGVVA AGCVAAGDVE AAREVARDAV GRGLRWDAPA
301: LSELVAPLRA GGHVARARPL LLDILRDGCC AAPVDAAVFE QLVGGASCAV GEGLGVEAVP R

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.