Factsheet for PGSC0003DMT400085647

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088113	Potato	nucleus	44.15	68.02
PGSC0003DMT400014406	Potato	nucleus	33.96	41.67
KRH63090	Soybean	nucleus	18.87	32.05
KRH62980	Soybean	nucleus	23.02	30.65
VIT_14s0006g01440.t01	Wine grape	nucleus	33.21	26.43
GSMUA_Achr2P22850_001	Banana	cytosol	27.55	23.62
KRH30959	Soybean	mitochondrion	24.53	23.55
KRH01275	Soybean	nucleus	28.3	22.46
EES14943	Sorghum	nucleus	21.89	19.46
Os08t0384100-01	Rice	cytosol	22.64	19.23
TraesCS6A01G172500.1	Wheat	cytosol	20.38	19.01
TraesCS6D01G161700.2	Wheat	nucleus	20.38	17.88
TraesCS6B01G200200.1	Wheat	nucleus	20.38	17.82
KRH15123	Soybean	nucleus	27.55	15.9
Zm00001d032326_P002	Maize	cytosol, plastid	20.75	15.19
KRH73012	Soybean	nucleus	15.47	14.04
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	21.13	13.79
PGSC0003DMT400022469	Potato	nucleus	16.6	13.58
PGSC0003DMT400020800	Potato	nucleus	18.87	12.22
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	20.38	10.67
Zm00001d052326_P001	Maize	cytosol	7.17	5.26
EES09107	Sorghum	cytosol	6.79	4.99
TraesCS5A01G149300.1	Wheat	cytosol, plastid	6.04	4.65
TraesCS5B01G148000.1	Wheat	plastid	5.66	4.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400085647	EnsemblPlantsGene:PGSC0003DMG400035218	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	PFAM:PF00035
PFscan:PS50137	PGSC:PGSC0003DMG400035218	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00029697D5	UniProt:M1D9Y8
MapMan:35.1	:	:	:	:	:

Description

Double-stranded RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035218]

Coordinates

chr3:+:36054875..36059510

Molecular Weight (calculated)

30310.5 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.474

Length

265 amino acids

Sequence
(BLAST)

001: IYKNQLQEYT QKVGKRLLIY QSFNEGSENF PKHRAKVLVD GVEYTSKLTH STKKQAEQEV AKIACESIFH EETEVESFLF LYEDPTLCKS ILNEFAINKK
101: MKPTYNMISQ AKGQSLVFIC HLAFGGKTYI GEEAGNKKLA EHLAARTAIK LLLVPPAQVM YKNQLQEYTQ KNVKQLSIYE TVNEGFPHAP KFRAKVLVDG
201: YEYESKSTYP TKKEAEQAVA KIAYECIHNK IDARDISLNL SLCVGRQNLL SPVFRLIRNT ETEKK

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.