Factsheet for Zm00001d032326_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14943	Sorghum	nucleus	66.57	80.87
TraesCS6A01G172500.1	Wheat	cytosol	36.74	46.83
TraesCS6D01G161700.2	Wheat	nucleus	36.46	43.71
TraesCS6B01G200200.1	Wheat	nucleus	35.91	42.9
KRH63090	Soybean	nucleus	16.3	37.82
Os08t0384100-01	Rice	cytosol	32.6	37.82
KRH62980	Soybean	nucleus	17.13	31.16
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	15.75	28.79
PGSC0003DMT400088113	Potato	nucleus	12.43	26.16
VIT_14s0006g01440.t01	Wine grape	nucleus	23.76	25.83
PGSC0003DMT400014406	Potato	nucleus	14.92	25.0
GSMUA_Achr2P22850_001	Banana	cytosol	18.78	22.01
PGSC0003DMT400085647	Potato	cytosol, nucleus	15.19	20.75
KRH01275	Soybean	nucleus	17.4	18.86
KRH30959	Soybean	mitochondrion	14.36	18.84
Zm00001d022648_P001	Maize	mitochondrion, nucleus	11.6	17.07
Zm00001d005065_P002	Maize	cytosol	19.61	16.36
KRH15123	Soybean	nucleus	19.61	15.47
KRH73012	Soybean	nucleus	12.43	15.41
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	12.98	13.28
Zm00001d032679_P001	Maize	nucleus	14.36	10.1
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	14.09	9.81
Zm00001d024861_P007	Maize	nucleus	13.54	9.53
Zm00001d052326_P001	Maize	cytosol	7.46	7.48

Protein Annotations

EnsemblPlants:Zm00001d032326_P002	EnsemblPlants:Zm00001d032326_T002	EnsemblPlantsGene:Zm00001d032326	EntrezGene:100191297	Gene3D:3.30.160.20	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207
PANTHER:PTHR11207:SF8	PFAM:PF00035	PFscan:PS50137	ProteinID:ONM04863.1	SEG:seg	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI00084477EE	UniProt:A0A1D6KQ06	MapMan:35.1	:	:

Description

Double-stranded RNA-binding protein 1

Coordinates

chr1:+:222592657..222598421

Molecular Weight (calculated)

38814.0 Da

IEP (calculated)

9.032

GRAVY (calculated)

-0.285

Length

362 amino acids

Sequence
(BLAST)

001: MKPKTDTTVC FQIIQSEVSK SKRVNPLPFH CCPSPTTSEM AGTVTATATT ATTEVGTTVT AATSEMEATA TAATSELEAT ATAAAIGPPS AIPDKYMHKN
101: RLQSFAERTY KKTPIYKVES EGQSHQPKFT CTVEVGDQQF SSTGSFSRKK EAEQDAARVA YEILTTVSES DVKEAFELID QDAVFCKSIL IEFAVKTKTT
201: LPSYSVVCVC LKKPLTLFAA IVVFDGNAYH GESAPNKKDA EQNAARVVIK SILAKHDTCM VRIVRSKKQL ITAVRSSGNT PATFTPIQFT RPVSYAAYGR
301: PDDTTPVLPN ESSSLAVQRG INVVPAVGTS VNPSSANVSR SKKRKGRVEG AGGNDTWVAK GH

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.