Factsheet for GSMUA_Achr2P22850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63090	Soybean	nucleus	20.06	39.74
VIT_14s0006g01440.t01	Wine grape	nucleus	40.45	37.54
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	23.95	37.37
KRH62980	Soybean	nucleus	22.98	35.68
PGSC0003DMT400014406	Potato	nucleus	23.3	33.33
PGSC0003DMT400088113	Potato	nucleus	17.8	31.98
PGSC0003DMT400085647	Potato	cytosol, nucleus	23.62	27.55
KRH30959	Soybean	mitochondrion	24.27	27.17
Solyc02g091460.2.1	Tomato	nucleus	15.86	26.78
TraesCS6A01G172500.1	Wheat	cytosol	24.27	26.41
KRH01275	Soybean	nucleus	27.83	25.75
TraesCS6D01G161700.2	Wheat	nucleus	24.6	25.17
TraesCS6B01G200200.1	Wheat	nucleus	24.27	24.75
EES14943	Sorghum	nucleus	23.62	24.5
Os08t0384100-01	Rice	cytosol	22.98	22.76
KRH15123	Soybean	nucleus	30.74	20.7
Zm00001d032326_P002	Maize	cytosol, plastid	22.01	18.78
GSMUA_Achr7P01540_001	Banana	cytosol	15.86	18.22
KRH73012	Soybean	nucleus	17.15	18.15
GSMUA_Achr11P...	Banana	nucleus	21.36	17.65
GSMUA_Achr4P21490_001	Banana	nucleus	21.36	16.79
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	18.12	15.56
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	20.71	14.19
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	19.74	13.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	20.39	13.4
GSMUA_Achr5P00420_001	Banana	nucleus	21.04	11.32
TraesCS5A01G149300.1	Wheat	cytosol, plastid	9.39	8.43
TraesCS5B01G148000.1	Wheat	plastid	9.06	8.14
Zm00001d052326_P001	Maize	cytosol	9.06	7.76
EES09107	Sorghum	cytosol	8.41	7.2

Protein Annotations

EnsemblPlants:GSMUA_Achr2P22850_001	EnsemblPlants:GSMUA_Achr2T22850_001	EnsemblPlantsGene:GSMUA_Achr2G22850_001	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8
PFAM:PF00035	PFscan:PS50137	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000296CC99	UniProt:M0SAC6
MapMan:35.1	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G22850_001]

Coordinates

chr2:-:21769248..21772790

Molecular Weight (calculated)

34005.4 Da

IEP (calculated)

7.968

GRAVY (calculated)

-0.412

Length

309 amino acids

Sequence
(BLAST)

001: MAEEFMHKNR LQEYTQRSSI TLPLYQTINE GTPHAPEFRS TVVVDGKNFT SPCTFPTKKA AEQCAAKFAL EGIRIINKNK GLSLIHNDTI LCKLILHEYS
101: VKMNMNLPTY ETSHKPGLIP AFVSSVLFDN KTFKGETAMS KKEAERVAAC TVIKYILGNC DTGDIMRQII ESKNKHYAVV HRGKGSCSSL ARNAETSGPS
201: SSIQENKMLA PLFYDIPHAV AYSEAFASVP ANTAAADSIC SAKEEYAGKT EVPSDDPTSH ARDVVPISSK GRSREKNEEQ CQLKKARVDG QSQFEPCAQH
301: SGNLVIIDI

Best Arabidopsis Sequence Match ( AT3G26932.1 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.