Factsheet for GSMUA_Achr11P22880_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G28380.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G28380.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	27.94	81.29
KRG90046	Soybean	nucleus	15.08	75.56
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	72.51	73.81
KRH58007	Soybean	nucleus	14.41	72.22
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	75.17	72.13
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	57.43	62.71
KRH25014	Soybean	cytosol, nucleus, plastid	54.99	61.85
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	53.22	61.07
KRH29911	Soybean	cytosol, nucleus, plastid	55.43	60.83
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	54.55	59.85
PGSC0003DMT400020800	Potato	nucleus	52.99	58.44
Solyc11g069460.1.1	Tomato	nucleus	52.33	57.0
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.77	55.35
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	52.77	55.35
CDY30490	Canola	nucleus	53.22	55.3
Bra035704.1-P	Field mustard	nucleus	52.77	54.97
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	52.55	54.73
CDY15737	Canola	cytosol	52.33	54.5
AT2G28380.1	Thale cress	cytosol	52.33	54.38
Os10t0480500-01	Rice	cytosol, nucleus, plastid	55.43	48.64
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	55.21	47.88
Zm00001d032679_P001	Maize	nucleus	54.55	47.77
HORVU1Hr1G041820.1	Barley	nucleus	55.65	47.63
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	52.33	46.64
TraesCS1D01G155300.1	Wheat	nucleus	54.99	46.62
TraesCS1A01G157700.3	Wheat	nucleus	54.32	46.58
TraesCS1B01G174000.1	Wheat	nucleus	54.32	46.49
KXG38314	Sorghum	mitochondrion, nucleus	54.77	45.74
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	52.77	43.04
GSMUA_Achr5P00420_001	Banana	nucleus	39.02	30.66
GSMUA_Achr4P21490_001	Banana	nucleus	21.73	24.94
GSMUA_Achr2P22850_001	Banana	cytosol	14.19	20.71
GSMUA_Achr7P01540_001	Banana	cytosol	11.75	19.7
GSMUA_Achr11P...	Banana	nucleus	15.3	18.45
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	12.86	16.11

Protein Annotations

EnsemblPlants:GSMUA_Achr11P22880_001	EnsemblPlants:GSMUA_Achr11T22880_001	EnsemblPlantsGene:GSMUA_Achr11G22880_001	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000295D509
UniProt:M0RUL8	MapMan:35.1	:	:	:	:

Description

double-stranded RNA binding motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G22880_001]

Coordinates

chr11:-:23020238..23027133

Molecular Weight (calculated)

48738.7 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.193

Length

451 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKAAVNFN GEVFESPSFC TTLRQAEHSA AEVALAALSH RGPSHSLAAR ILDETGVYKN LLQEISQRVG
101: APLPSYTSVR SGLGHLPVFT CTVELAGITF TGEPAKNKKQ AEKNAALAAW SSLKRLAKEA ASSSTEQNND EQEQITIARA LLNYRLKEKI AMANNPHATP
201: FPKKFPVQLD KKPASLQSPL SVSKILPLIR QNSIPRGRAT SRGINDGAHS SFQENHNERP QNFPVAAAAP YFPVRPFGRP CHGMAPPVTI RTAVPVFSAP
301: PLPPPPSQVC QQRLPVIGHT QIRMASPVRI RQSVPVFSAP PPLPPVTSVI PVRVKEPLPV VSPPSLDKVL VPVIASALPV QVKESVPVAT ASLSVNERSP
401: VTAPAVPVLV KEPLSSIQTH EPSISSLACP AVKPLSQIED FDFREATLLE S

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.