Factsheet for GSMUA_Achr11P11440_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr5P22670_001
GSMUA_Achr5P22680_001
GSMUA_Achr6P01800_001
GSMUA_Achr7P19610_001
GSMUA_Achr8P14120_001
GSMUA_Achr8P16450_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	GSMUA_Achr11P...	AT1G09700.1	15821876
AT1G09700.1	GSMUA_Achr8P16450_001	AT1G09700.1	15821876
AT1G09700.1	GSMUA_Achr10P...	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr5P22670_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr5P22680_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr6P01800_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr7P19610_001	AT2G27100.1	23141542
AT1G09700.1	GSMUA_Achr11P...	AT4G21670.1	23141542
AT1G09700.1	GSMUA_Achr11P...	AT4G21670.1	23141542
AT1G09700.1	GSMUA_Achr11P...	AT4G21670.1	23141542
AT1G09700.1	GSMUA_Achr8P14120_001	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	51.07	53.06
Bra019999.1-P	Field mustard	plastid	34.22	46.72
CDX93488	Canola	plastid	34.22	46.55
CDY20678	Canola	cytosol	34.22	46.21
Bra030793.1-P	Field mustard	cytosol	34.22	46.04
OQU82704	Sorghum	cytosol, nucleus	39.3	44.68
CDX94957	Canola	cytosol, nucleus, plastid	33.42	44.17
KRH62246	Soybean	nucleus	40.11	41.78
KRH52961	Soybean	nucleus	40.37	41.6
CDY31070	Canola	endoplasmic reticulum, golgi	35.03	40.81
Os05t0307400-01	Rice	cytosol	44.92	38.44
VIT_18s0001g07670.t01	Wine grape	nucleus	40.11	37.5
Os11t0109900-01	Rice	cytosol	45.99	36.36
KXG22802	Sorghum	mitochondrion	41.44	35.88
Zm00001d005065_P002	Maize	cytosol	41.44	35.71
TraesCS4A01G180400.1	Wheat	cytosol	37.43	34.4
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	37.17	34.07
TraesCS4D01G132400.1	Wheat	cytosol	37.17	34.07
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	35.83	33.0
AT1G09700.1	Thale cress	plastid	35.56	31.74
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	35.56	30.72
TraesCS5D01G143500.2	Wheat	nucleus	41.98	29.73
TraesCS5B01G148100.2	Wheat	nucleus	41.71	29.43
TraesCS5A01G149400.2	Wheat	mitochondrion	41.44	27.88
HORVU5Hr1G047100.5	Barley	nucleus	40.64	26.53
GSMUA_Achr2P22850_001	Banana	cytosol	17.65	21.36
GSMUA_Achr7P01540_001	Banana	cytosol	11.5	15.99
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	18.45	15.58
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	18.45	15.3
Os12t0109900-02	Rice	cytosol	18.72	15.15
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	18.98	15.11
GSMUA_Achr4P21490_001	Banana	nucleus	14.71	13.99
GSMUA_Achr5P00420_001	Banana	nucleus	17.91	11.67

Protein Annotations

MapMan:16.10.2.1.2	Gene3D:3.30.160.20	InterPro:DRB	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr11G11440_001
EnsemblPlants:GSMUA_Achr11P11440_001	EnsemblPlants:GSMUA_Achr11T11440_001	InterPro:IPR014720	UniProt:M0RRC4	PFAM:PF00035	PFscan:PS50137
PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	SMART:SM00358	SUPFAM:SSF54768	TMHMM:TMhelix	UniParc:UPI000294A156
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G11440_001]

Coordinates

chr11:-:9950316..9953378

Molecular Weight (calculated)

42048.8 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.362

Length

374 amino acids

Sequence
(BLAST)

001: MNLEGFALRE YTEKNKDNTT EKSPDNTKGV ASCYVFKSRL QEYAQKVGIP TPVYQTLKEG PSHEPVFKST VIVNHVRYDS LPGFFNRKAA EQSAAEIALV
101: EIHKSGQMIE NLPTVHETGL CKNLLQEYAQ KMNYAIPSYI CTKNSSGATP FTCTVEIGGI QYIGAAARTK KEAEIKAART ALLAIQGQSR KGTDSASQYA
201: VLPGKRKVKE PEVHAEAVKK IKPKKANFKK KWSKKRFPRS KDGHVVKSNK DEPVTVMPED DSRVPSSNIQ IEEALAHHGK YRRVYSGWML LVHNGLGSLL
301: SANISCSFFY YHLLPCLRIP MPCLTNGFVT HYSFRFPFIK GINWSQFELV SCFLGSLSFH LLLFARDLKK DFIL

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.