Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G143500.2 | Wheat | nucleus | 95.66 | 96.02 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 95.28 | 90.83 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 88.11 | 81.5 |
| Os11t0109900-01 | Rice | cytosol | 51.89 | 58.14 |
| Os05t0307400-01 | Rice | cytosol | 47.92 | 58.12 |
| OQU82704 | Sorghum | cytosol, nucleus | 36.04 | 58.05 |
| KXG22802 | Sorghum | mitochondrion | 42.64 | 52.31 |
| Zm00001d005065_P002 | Maize | cytosol | 42.08 | 51.38 |
| Bra019999.1-P | Field mustard | plastid | 23.58 | 45.62 |
| CDY20678 | Canola | cytosol | 23.58 | 45.13 |
| CDX93488 | Canola | plastid | 23.21 | 44.73 |
| Bra030793.1-P | Field mustard | cytosol | 23.21 | 44.24 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 22.45 | 42.05 |
| GSMUA_Achr11P... | Banana | nucleus | 29.43 | 41.71 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 23.58 | 38.94 |
| KRH52961 | Soybean | nucleus | 26.42 | 38.57 |
| KRH62246 | Soybean | nucleus | 26.04 | 38.44 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 28.68 | 38.0 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 24.34 | 35.83 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 25.47 | 33.25 |
| AT1G09700.1 | Thale cress | plastid | 24.91 | 31.5 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 25.28 | 30.95 |
| Os12t0109900-02 | Rice | cytosol | 17.17 | 19.7 |
| TraesCS6B01G200200.1 | Wheat | nucleus | 11.13 | 19.47 |
| TraesCS5B01G289100.1 | Wheat | nucleus | 12.45 | 18.03 |
| TraesCS1B01G119000.1 | Wheat | nucleus | 14.91 | 13.67 |
| TraesCS1B01G174000.1 | Wheat | nucleus | 13.58 | 13.66 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 12.08 | 11.74 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 12.83 | 11.22 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 12.64 | 11.06 |
| TraesCS5B01G148000.1 | Wheat | plastid | 5.47 | 8.43 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G148100.2 | EnsemblPlantsGene:TraesCS5B01G148100 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | InterPro:DRB | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:16.10.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:276657171..276659942
Molecular Weight (calculated)
57485.3 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.713
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAGMATLP EANTSPAPNG GGCGGIRVEN CYVFKSRLQE YAQKAGLMTP EYQTLKEGPS HEPIFKSSVV INNTKYDSLP GFFSRKAAEQ SAAEVALMEI
101: GKSVVLPTNA TIPAVQETGL CKNLLQEYAQ KMNYAIPSYI CNKQGPYICT VEIGGIQYIG ATARTKKEAE IKAARTALLA IQVAGQSEGC ANGTTKYIVV
201: PGKRQGKEIE KKPVETPKSL KTKKGGFKKQ RNKNKFIKKN GQEVNEEKDE TGVPGDAHHS DVPMKPAVTT EDPVTNTVMI QPDEAWPFEH EPTGDTAMLQ
301: PIEDAWPSKH EPTGETAMLQ PDGEATKVEQ EQLSDTAMLQ PDDEGGRVEH EPLSNAPMVL RNEEARNVKQ EALISTAMPQ PHMEDRRVGA EPPRDAAMVQ
401: PNDEARCIKQ ELLIDAAMPL PNEEAGAAAN PVPLSDSITA QPNAVTTNIN EESLRNAASV QHNEEARTVN QEPPSSASLQ QPKEPRVENG EFVSENKDQT
501: LGDASREANR SNEDVPEKCS DNSSAFTSVE
101: GKSVVLPTNA TIPAVQETGL CKNLLQEYAQ KMNYAIPSYI CNKQGPYICT VEIGGIQYIG ATARTKKEAE IKAARTALLA IQVAGQSEGC ANGTTKYIVV
201: PGKRQGKEIE KKPVETPKSL KTKKGGFKKQ RNKNKFIKKN GQEVNEEKDE TGVPGDAHHS DVPMKPAVTT EDPVTNTVMI QPDEAWPFEH EPTGDTAMLQ
301: PIEDAWPSKH EPTGETAMLQ PDGEATKVEQ EQLSDTAMLQ PDDEGGRVEH EPLSNAPMVL RNEEARNVKQ EALISTAMPQ PHMEDRRVGA EPPRDAAMVQ
401: PNDEARCIKQ ELLIDAAMPL PNEEAGAAAN PVPLSDSITA QPNAVTTNIN EESLRNAASV QHNEEARTVN QEPPSSASLQ QPKEPRVENG EFVSENKDQT
501: LGDASREANR SNEDVPEKCS DNSSAFTSVE
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.