Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 98.72 | 98.86 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 93.79 | 97.26 |
| HORVU5Hr1G019300.8 | Barley | plastid | 93.65 | 88.95 |
| Os03t0583900-01 | Rice | nucleus | 70.45 | 70.0 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 6.92 | 67.83 |
| OQU91441 | Sorghum | nucleus | 66.45 | 67.17 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 66.95 | 64.03 |
| Zm00001d013797_P006 | Maize | nucleus | 30.26 | 57.69 |
| KXG38096 | Sorghum | plastid | 31.55 | 56.81 |
| KRH11802 | Soybean | cytosol | 9.85 | 48.42 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 46.04 | 46.24 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 43.68 | 45.27 |
| Solyc06g048960.2.1 | Tomato | vacuole | 44.9 | 44.96 |
| PGSC0003DMT400042918 | Potato | nucleus | 34.62 | 43.93 |
| Bra031999.1-P | Field mustard | nucleus | 40.04 | 43.93 |
| AT3G03300.1 | Thale cress | nucleus | 43.4 | 43.8 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 42.97 | 43.37 |
| CDY50692 | Canola | nucleus | 42.83 | 43.2 |
| Solyc11g008520.1.1 | Tomato | nucleus | 43.97 | 43.14 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 40.33 | 42.9 |
| KRH36816 | Soybean | cytosol | 43.47 | 42.86 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 42.97 | 42.57 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 18.99 | 33.76 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 7.14 | 32.36 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 7.0 | 31.31 |
| TraesCS2D01G479300.1 | Wheat | plastid | 6.71 | 27.17 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 30.98 | 26.71 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 29.91 | 25.74 |
| TraesCS3D01G411200.6 | Wheat | nucleus | 28.91 | 24.79 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 31.76 | 21.99 |
| TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 5.5 | 20.92 |
| TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 5.5 | 20.7 |
| TraesCS7D01G504300.3 | Wheat | mitochondrion | 5.42 | 20.54 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006396 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0016787 |
| GO:GO:0016891 | GO:GO:0040029 | GO:GO:0051214 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 |
| InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 |
| InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS5D01G086900 |
| EnsemblPlants:TraesCS5D01G086900.1 | TIGR:cd00046 | TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg |
Description
No Description!
Coordinates
chr5D:-:92141118..92174976
Molecular Weight (calculated)
157772.0 Da
IEP (calculated)
7.358
GRAVY (calculated)
-0.159
Length
1401 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGDAATAAVA ADADAAATEE VHKEDPEIVA RWYQLEALER AMSGNTVAFL DTGAGKTLIA GLLLRAYAHR VRKPARDYAV FLVPTRVLVE QQARVVEAHT
0101: DLRVSKFTGD MGVDFWNAAI WRRVVDDAEV LVMTPQILLD NLRHSFFSLQ DIALLIFDEC HRAKGNSPYA CILKEFYHPV MNSRPRGPLP RIFGMTASPT
0201: DSKNLLQESY SKRIVELENL LNSKVYTVDN ESALSEYIPF ATTRIVQYDD YIIPSNSHNH IKSCLDRLQE KHLEVLKANL HGLSRKNAKK GISKLHKAFL
0301: YCTANLGVWL AAKAAEIHST TNEQFLSFWG EELDKNVEGF VRSYSEEVYR ELSCFSKRGH IGEDFAADLQ DGLLTPKVHC LVQFLLEYRH MQDLRCIVFV
0401: ERVVTSIVLE SLLSTINQMP GWIVKHIAGN RPMFHNQSRN KQTEIVDAFK GGKVHIIVTT QVLEEGLNVP GCHLVIRFDP PTTGRSFIQS RGRARMPNSD
0501: YVLLVRRGDA EAHSKTLKFL ASGQIMREAS LKLASTMCQP LEDTLLQEEY YRVESTGATV TMNSSVQLIY FFCSKLPSDE YFKPLPRFII DKELRTCTLY
0601: LPNSSPVQAV NTEGEVSALK KAVCLKACRE LHAVGALTDY LLPEFGFPCE EEPDIVVEKY QHEQPEYFPE EFVYNWLYFS RLGIYYCYKI SVEGCLKTTY
0701: CPNDILLAVK CDLGPDFVST SLKLFGEQDN ASVAMKYVGN IHLNQEQVVM ARRFQTSILS LLINKDHSEV INAVKYSHEM QVSTGIVYLL LPLVCGKVDW
0801: CSMKFSTSQV YDASNKDIRH CHSCKQVDLL QTKDGPLCRC MLQNSIVCTP HNSKFYAVNG FLDLNSKSLL HLRDGRALTY INYFDTRHGL SLTHENQPLL
0901: AARNPVEVRN FLQKRHYKNK KESRTSHGVE LPPELCRLVM SPVSNNTLYS FSVIPSVMYR IQCLLLSARL KDQLGPTMQQ FAIPALKILE AVTTKECQEE
1001: FSQESLETLG DSFLKYVATQ HLYGKYKLQH EGTLTKMKKN LISNAALCQL ACSNNLVGYI QGEEFNPKGW IIPGLGYDMC GNSKISFLSS NDMHILRKMS
1101: VRSKRIADTV EALIGAYLGA AGEQAAFVFL KSLGLDIEFH SNIPLERKIV LKSEKFINVR SLEMILGYEF KDTSLLVEAL THGSYQTAGA TACYQRLEFL
1201: GDAVLDHLFT IYFYNQYPEC TPELLTDLRS ASVNNNCYAH AAAKAGLNKH ILHSSLQLHG RMAYYFENFK QPFTGPSHGW EAGIGLPKVL GDVIESLAGA
1301: IYLDSKYDKE VVWKSMKQLL EPLATPETVE RDPVKLLQEF CARRSYSSSY TKAHKDGVSS VVVEVQVEGT TYSATETGPD KIVAKKLAAK SLLNNLKAIV
1401: P
0101: DLRVSKFTGD MGVDFWNAAI WRRVVDDAEV LVMTPQILLD NLRHSFFSLQ DIALLIFDEC HRAKGNSPYA CILKEFYHPV MNSRPRGPLP RIFGMTASPT
0201: DSKNLLQESY SKRIVELENL LNSKVYTVDN ESALSEYIPF ATTRIVQYDD YIIPSNSHNH IKSCLDRLQE KHLEVLKANL HGLSRKNAKK GISKLHKAFL
0301: YCTANLGVWL AAKAAEIHST TNEQFLSFWG EELDKNVEGF VRSYSEEVYR ELSCFSKRGH IGEDFAADLQ DGLLTPKVHC LVQFLLEYRH MQDLRCIVFV
0401: ERVVTSIVLE SLLSTINQMP GWIVKHIAGN RPMFHNQSRN KQTEIVDAFK GGKVHIIVTT QVLEEGLNVP GCHLVIRFDP PTTGRSFIQS RGRARMPNSD
0501: YVLLVRRGDA EAHSKTLKFL ASGQIMREAS LKLASTMCQP LEDTLLQEEY YRVESTGATV TMNSSVQLIY FFCSKLPSDE YFKPLPRFII DKELRTCTLY
0601: LPNSSPVQAV NTEGEVSALK KAVCLKACRE LHAVGALTDY LLPEFGFPCE EEPDIVVEKY QHEQPEYFPE EFVYNWLYFS RLGIYYCYKI SVEGCLKTTY
0701: CPNDILLAVK CDLGPDFVST SLKLFGEQDN ASVAMKYVGN IHLNQEQVVM ARRFQTSILS LLINKDHSEV INAVKYSHEM QVSTGIVYLL LPLVCGKVDW
0801: CSMKFSTSQV YDASNKDIRH CHSCKQVDLL QTKDGPLCRC MLQNSIVCTP HNSKFYAVNG FLDLNSKSLL HLRDGRALTY INYFDTRHGL SLTHENQPLL
0901: AARNPVEVRN FLQKRHYKNK KESRTSHGVE LPPELCRLVM SPVSNNTLYS FSVIPSVMYR IQCLLLSARL KDQLGPTMQQ FAIPALKILE AVTTKECQEE
1001: FSQESLETLG DSFLKYVATQ HLYGKYKLQH EGTLTKMKKN LISNAALCQL ACSNNLVGYI QGEEFNPKGW IIPGLGYDMC GNSKISFLSS NDMHILRKMS
1101: VRSKRIADTV EALIGAYLGA AGEQAAFVFL KSLGLDIEFH SNIPLERKIV LKSEKFINVR SLEMILGYEF KDTSLLVEAL THGSYQTAGA TACYQRLEFL
1201: GDAVLDHLFT IYFYNQYPEC TPELLTDLRS ASVNNNCYAH AAAKAGLNKH ILHSSLQLHG RMAYYFENFK QPFTGPSHGW EAGIGLPKVL GDVIESLAGA
1301: IYLDSKYDKE VVWKSMKQLL EPLATPETVE RDPVKLLQEF CARRSYSSSY TKAHKDGVSS VVVEVQVEGT TYSATETGPD KIVAKKLAAK SLLNNLKAIV
1401: P
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.