Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G180400.1 | Wheat | cytosol | 89.22 | 89.43 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 78.68 | 78.68 |
| OQU82704 | Sorghum | cytosol, nucleus | 42.4 | 52.58 |
| Os05t0307400-01 | Rice | cytosol | 51.96 | 48.51 |
| Os11t0109900-01 | Rice | cytosol | 55.39 | 47.78 |
| KXG22802 | Sorghum | mitochondrion | 48.53 | 45.83 |
| Zm00001d005065_P002 | Maize | cytosol | 47.06 | 44.24 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 52.7 | 40.72 |
| CDX93488 | Canola | plastid | 27.21 | 40.36 |
| Bra019999.1-P | Field mustard | plastid | 26.96 | 40.15 |
| CDY20678 | Canola | cytosol | 26.96 | 39.71 |
| Bra030793.1-P | Field mustard | cytosol | 26.72 | 39.21 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 26.47 | 38.16 |
| GSMUA_Achr11P... | Banana | nucleus | 34.07 | 37.17 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 27.21 | 34.58 |
| KRH62246 | Soybean | nucleus | 29.66 | 33.7 |
| KRH52961 | Soybean | nucleus | 29.66 | 33.33 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 31.13 | 31.75 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 27.45 | 31.11 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 28.92 | 29.06 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 29.41 | 27.71 |
| AT1G09700.1 | Thale cress | plastid | 28.43 | 27.68 |
| TraesCS6D01G161700.2 | Wheat | nucleus | 15.93 | 21.52 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 16.18 | 16.34 |
| Os12t0109900-02 | Rice | cytosol | 17.65 | 15.58 |
| TraesCS1D01G155300.1 | Wheat | nucleus | 18.14 | 13.91 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 18.87 | 13.49 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 14.95 | 10.07 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G132400.1 | EnsemblPlantsGene:TraesCS4D01G132400 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | InterPro:DRB | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:16.10.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:119233031..119235433
Molecular Weight (calculated)
44797.0 Da
IEP (calculated)
9.574
GRAVY (calculated)
-0.528
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAAPAPNA SGIRPVKCDA FKSWLQEYAQ KAGLLAPEYH TLKEGPCHEP IFKSAVVIDG AKYDSLPGFF TRKAAEQSAA EVALMEIVES IPTIGRIPAA
101: LETGLCKNLL QEYAQKMNYT PSYSLTRQAS GIAPFTCTVE IGGIQYIGPA ARSKKEAEIK GAQTALLAIQ GSVCAGQLEG RRSGATKHIV VPSKRQVKET
201: TKKLIEIPKP LAVKKGGFKK KWNKRKFMKR NRQAVDVEKN EGKMAGDVIN SVSRCIQQST QEPSSDAVML KDDEEARRVV QEPGGDAVML QPSKEARRAE
301: PESGVAVLKP DELDRRVEHV QGSDIVMLPS DHEAIRVKPV PGSDTAILQR NNRARNVEQE PPRDYGMVRS NKEAGCVNQE LLGETAMPRN VREARTMMRD
401: PQHRCSLM
101: LETGLCKNLL QEYAQKMNYT PSYSLTRQAS GIAPFTCTVE IGGIQYIGPA ARSKKEAEIK GAQTALLAIQ GSVCAGQLEG RRSGATKHIV VPSKRQVKET
201: TKKLIEIPKP LAVKKGGFKK KWNKRKFMKR NRQAVDVEKN EGKMAGDVIN SVSRCIQQST QEPSSDAVML KDDEEARRVV QEPGGDAVML QPSKEARRAE
301: PESGVAVLKP DELDRRVEHV QGSDIVMLPS DHEAIRVKPV PGSDTAILQR NNRARNVEQE PPRDYGMVRS NKEAGCVNQE LLGETAMPRN VREARTMMRD
401: PQHRCSLM
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.