Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20678 | Canola | cytosol | 81.93 | 94.95 |
| Bra030793.1-P | Field mustard | cytosol | 81.62 | 94.24 |
| CDX93488 | Canola | plastid | 73.83 | 86.18 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 71.96 | 81.63 |
| AT1G09700.1 | Thale cress | plastid | 68.22 | 52.27 |
| KRH62246 | Soybean | nucleus | 47.66 | 42.62 |
| KRH52961 | Soybean | nucleus | 47.98 | 42.42 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 45.79 | 36.75 |
| OQU82704 | Sorghum | cytosol, nucleus | 36.14 | 35.26 |
| GSMUA_Achr11P... | Banana | nucleus | 40.81 | 35.03 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 39.88 | 31.53 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 33.64 | 30.0 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 39.56 | 29.33 |
| Os05t0307400-01 | Rice | cytosol | 39.56 | 29.06 |
| KXG22802 | Sorghum | mitochondrion | 38.63 | 28.7 |
| Os11t0109900-01 | Rice | cytosol | 40.19 | 27.27 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 34.58 | 27.21 |
| Zm00001d005065_P002 | Maize | cytosol | 36.45 | 26.96 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 33.96 | 26.78 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 33.64 | 26.47 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 38.94 | 23.67 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 38.94 | 23.58 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 38.94 | 22.48 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 38.94 | 21.82 |
| CDY11449 | Canola | nucleus | 19.63 | 19.03 |
| CDX76663 | Canola | cytosol | 19.63 | 18.81 |
| CDY00177 | Canola | nucleus | 20.25 | 18.47 |
| CDY12250 | Canola | nucleus | 19.31 | 17.66 |
| CDY48959 | Canola | nucleus | 19.0 | 16.71 |
| CDY28511 | Canola | nucleus | 19.63 | 16.71 |
| CDY34199 | Canola | nucleus | 19.31 | 16.62 |
| CDY46403 | Canola | nucleus | 19.31 | 16.45 |
| CDX77176 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.81 | 16.17 |
| CDY30490 | Canola | nucleus | 21.81 | 16.13 |
| CDY04559 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.5 | 16.05 |
| CDY15737 | Canola | cytosol | 21.18 | 15.7 |
| Os12t0109900-02 | Rice | cytosol | 19.31 | 13.42 |
Protein Annotations
| MapMan:16.10.2.1.2 | Gene3D:3.30.160.20 | GO:A0A078GX96 | UniProt:A0A078GX96 | EnsemblPlants:CDY31070 | ProteinID:CDY31070 |
| ProteinID:CDY31070.1 | InterPro:DRB | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003725 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00047145001 | InterPro:IPR014720 |
| PFAM:PF00035 | PFscan:PS50137 | PANTHER:PTHR11207 | PANTHER:PTHR11207:SF1 | SMART:SM00358 | SUPFAM:SSF54768 |
| TMHMM:TMhelix | UniParc:UPI0004EE56A6 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
BnaA08g26200DBnaA08g26200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX96]
Coordinates
chrLK032267:+:134149..135863
Molecular Weight (calculated)
35549.6 Da
IEP (calculated)
8.520
GRAVY (calculated)
-0.291
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MTANELPSVL CVTYYYSFHN TSFALLVLNN CYLTIDLAFF FLLSGVSNCY VFKSRLQEYA QKYKLPTPIY ETVKEGPSHK SLFQSTVIVD GVRYDSLPGF
101: FNRKAAEQSA AEVALRELSK STELGQCVSL PVHEMGLCKN LLQEYAQKMN YAIPLYQCQK SETTGRAPQF TCTVEIGGIK YTGAATKTKR EAEISAGRTA
201: LIAIQSESKI DLANNHSTQL TVLPCEKKTV EVVSPVKETI KTPKARRAQF KRKAKKGKRK VVAKDLEDGT IIPPQPTEHC QNDQTENVEK VLNLEPSSCV
301: SVNGFKEAAA FASVETEASQ A
101: FNRKAAEQSA AEVALRELSK STELGQCVSL PVHEMGLCKN LLQEYAQKMN YAIPLYQCQK SETTGRAPQF TCTVEIGGIK YTGAATKTKR EAEISAGRTA
201: LIAIQSESKI DLANNHSTQL TVLPCEKKTV EVVSPVKETI KTPKARRAQF KRKAKKGKRK VVAKDLEDGT IIPPQPTEHC QNDQTENVEK VLNLEPSSCV
301: SVNGFKEAAA FASVETEASQ A
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.