Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G143500.2 | Wheat | nucleus | 91.01 | 95.83 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 90.83 | 95.28 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 88.31 | 85.69 |
| Os11t0109900-01 | Rice | cytosol | 49.46 | 58.14 |
| Os05t0307400-01 | Rice | cytosol | 45.14 | 57.44 |
| OQU82704 | Sorghum | cytosol, nucleus | 33.81 | 57.14 |
| KXG22802 | Sorghum | mitochondrion | 42.27 | 54.4 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 39.21 | 53.56 |
| Zm00001d005065_P002 | Maize | cytosol | 40.47 | 51.84 |
| Bra019999.1-P | Field mustard | plastid | 22.66 | 45.99 |
| CDY20678 | Canola | cytosol | 22.48 | 45.13 |
| CDX93488 | Canola | plastid | 22.3 | 45.09 |
| Bra030793.1-P | Field mustard | cytosol | 22.3 | 44.6 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 21.58 | 42.4 |
| GSMUA_Achr11P... | Banana | nucleus | 27.88 | 41.44 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 22.48 | 38.94 |
| KRH52961 | Soybean | nucleus | 25.36 | 38.84 |
| KRH62246 | Soybean | nucleus | 25.0 | 38.72 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 27.52 | 38.25 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 23.2 | 35.83 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 24.28 | 33.25 |
| AT1G09700.1 | Thale cress | plastid | 24.1 | 31.98 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 23.92 | 30.72 |
| TraesCS6A01G172500.1 | Wheat | cytosol | 10.79 | 21.13 |
| Os12t0109900-02 | Rice | cytosol | 16.37 | 19.7 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 12.23 | 18.73 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 5.58 | 17.61 |
| TraesCS1A01G091200.2 | Wheat | nucleus | 15.11 | 14.74 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 13.31 | 14.07 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 12.41 | 11.37 |
| TraesCS5A01G149300.1 | Wheat | cytosol, plastid | 5.58 | 9.01 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G149400.2 | EnsemblPlantsGene:TraesCS5A01G149400 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | InterPro:DRB | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:16.10.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:327432436..327435448
Molecular Weight (calculated)
59874.1 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.713
Length
556 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHSPPAQQR GRTKPSSLIL QSGGAVGMDG VGMATPPEAN TSPAPNGGGC GGIRVENCYV FKSRLQEYAQ KAGLMTPEYQ TLKEGPSHEP IFKSSVVINN
101: VKYDSLPGFF SRKAAEQSAA EVALMEIGKS VALPTNATIP AVQETGLCKN LLQEYAQKMN YAIPSYTCNK QGPYICTVEI GGIQYIGATA RTKKEAEIKA
201: ARTALLAIQV AGQSEGCANG TTKYIVVPGK RQGKEIEKKP VETPKSLKTK KGGFKKQRNK NKFIKKNGQE VNEEKDETGV PGDAHHSDVP VKPAVTTEDP
301: LTNTVMMQPD EAGPFEHEPT GDTAMLQPDE DAWPSEHEPT GHTAMLQPDG EATKVEQEQL SDTAMLQPDD EGGRVEHEPL SNAPMVLHNE EARNVKQEAL
401: IGTAMPQPHV EDRRVGAEPP RDAAMVQPND EARCVKQELL IDTAMPLPNE EAGAAANPVP LSDSITAQPN AETTNINESP RNAASAQHNE EARTVNQEPP
501: SSASLLQPKE PRVEIGEFVS ENKDQTLGDA SREANRSIED MPEKCSDNSS AFTSVE
101: VKYDSLPGFF SRKAAEQSAA EVALMEIGKS VALPTNATIP AVQETGLCKN LLQEYAQKMN YAIPSYTCNK QGPYICTVEI GGIQYIGATA RTKKEAEIKA
201: ARTALLAIQV AGQSEGCANG TTKYIVVPGK RQGKEIEKKP VETPKSLKTK KGGFKKQRNK NKFIKKNGQE VNEEKDETGV PGDAHHSDVP VKPAVTTEDP
301: LTNTVMMQPD EAGPFEHEPT GDTAMLQPDE DAWPSEHEPT GHTAMLQPDG EATKVEQEQL SDTAMLQPDD EGGRVEHEPL SNAPMVLHNE EARNVKQEAL
401: IGTAMPQPHV EDRRVGAEPP RDAAMVQPND EARCVKQELL IDTAMPLPNE EAGAAANPVP LSDSITAQPN AETTNINESP RNAASAQHNE EARTVNQEPP
501: SSASLLQPKE PRVEIGEFVS ENKDQTLGDA SREANRSIED MPEKCSDNSS AFTSVE
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.