Factsheet for Bra019999.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012034.1-P
Bra013546.1-P
Bra019999.1-P
Bra020905.1-P
Bra025523.1-P
Bra030793.1-P
Bra031999.1-P
Bra034322.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	Bra019999.1-P	AT1G09700.1	15821876
AT1G09700.1	Bra030793.1-P	AT1G09700.1	15821876
AT1G09700.1	Bra012034.1-P	AT2G27100.1	23141542
AT1G09700.1	Bra034322.1-P	AT2G27100.1	23141542
AT1G09700.1	Bra031999.1-P	AT3G03300.1	15821876
AT1G09700.1	Bra013546.1-P	AT4G21670.1	23141542
AT1G09700.1	Bra020905.1-P	AT4G21670.1	23141542
AT1G09700.1	Bra038764.1-P	AT4G21670.1	23141542
AT1G09700.1	Bra025523.1-P	AT5G41070.1	15821876
AT1G09700.1	Bra025523.1-P	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93488	Canola	plastid	97.81	97.45
CDX94957	Canola	cytosol, nucleus, plastid	91.97	89.05
Bra030793.1-P	Field mustard	cytosol	86.13	84.89
AT1G09700.1	Thale cress	plastid	78.83	51.55
KRH62246	Soybean	nucleus	55.84	42.62
KRH52961	Soybean	nucleus	56.2	42.42
VIT_18s0001g07670.t01	Wine grape	nucleus	54.74	37.5
OQU82704	Sorghum	cytosol, nucleus	42.7	35.56
GSMUA_Achr11P...	Banana	nucleus	46.72	34.22
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	47.81	32.27
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	47.81	30.25
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	39.42	30.0
KXG22802	Sorghum	mitochondrion	45.99	29.17
Os05t0307400-01	Rice	cytosol	46.35	29.06
Zm00001d005065_P002	Maize	cytosol	44.89	28.34
Os11t0109900-01	Rice	cytosol	47.08	27.27
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	40.15	26.96
TraesCS4D01G132400.1	Wheat	cytosol	40.15	26.96
TraesCS4A01G180400.1	Wheat	cytosol	39.78	26.78
TraesCS5D01G143500.2	Wheat	nucleus	45.99	23.86
TraesCS5B01G148100.2	Wheat	nucleus	45.62	23.58
TraesCS5A01G149400.2	Wheat	mitochondrion	45.99	22.66
HORVU5Hr1G047100.5	Barley	nucleus	46.35	22.16
Bra007702.1-P	Field mustard	nucleus	23.36	19.39
Bra039103.1-P	Field mustard	nucleus	24.45	19.09
Bra025523.1-P	Field mustard	nucleus	24.09	18.08
Bra032962.1-P	Field mustard	nucleus	24.09	17.69
Bra035704.1-P	Field mustard	nucleus	27.37	17.32
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.01	17.21
Os12t0109900-02	Rice	cytosol	22.99	13.64

Protein Annotations

EnsemblPlants:Bra019999.1	EnsemblPlants:Bra019999.1-P	EnsemblPlantsGene:Bra019999	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	InterPro:DRB	InterPro:IPR014720	InterPro:dsRBD_dom
PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358
SUPFAM:SSF54768	UniParc:UPI00000A4272	UniProt:M4DU06	MapMan:16.10.2.1.2	:	:

Description

AT1G09700 (E=1e-108) HYL1, DRB1 | HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding

Coordinates

chrA06:-:3321642..3323151

Molecular Weight (calculated)

30250.1 Da

IEP (calculated)

8.972

GRAVY (calculated)

-0.486

Length

274 amino acids

Sequence
(BLAST)

001: MTANEVSSGV SNCYVFKSRL QEYAQRYKLP TPLYETIKEG PSHKPLFQST VIVNDVRYDS LPGFFNRKAA EQSAAEVALQ ELAKSSDLTQ SVSLPVHEMG
101: LCKNLLQEYA QKMNYAIPLY QCQRSETLGR APQFTCTVEI GGIKYTGAAT KTKKEAEISA GRTALIAIQS ESKMDLANNY STQLTVIPCE KKTVEVASPV
201: KETIIKTPKA RRAQFKKKAR KGKLKVAKDL EDSTIPPQPT EHCQNQQLNL EPSSCVNGFK EAAFASVETE ASQA

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.