Factsheet for Bra025523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019999.1-P
Bra025315.1-P
Bra025523.1-P
Bra030793.1-P
Bra031999.1-P
Bra035784.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41070.1	Bra019999.1-P	AT1G09700.1	15821876
AT5G41070.1	Bra030793.1-P	AT1G09700.1	15821876
AT5G41070.1	Bra031999.1-P	AT3G03300.1	15821876
AT5G41070.1	Bra035784.1-P	AT3G20420.1	21798944
AT5G41070.1	Bra025315.1-P	AT3G27960.1	21798944
AT5G41070.1	Bra025523.1-P	AT5G41070.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48959	Canola	nucleus	100.0	100.0
AT5G41070.1	Thale cress	nucleus	73.7	68.45
Bra039103.1-P	Field mustard	nucleus	53.7	55.84
Bra032962.1-P	Field mustard	nucleus	54.79	53.62
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.82	42.09
TraesCS5A01G290100.2	Wheat	nucleus	40.82	41.05
TraesCS5B01G289100.1	Wheat	nucleus	40.82	40.71
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	41.1	37.13
VIT_14s0068g01520.t01	Wine grape	nucleus	48.22	36.59
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.64	35.35
Bra035704.1-P	Field mustard	nucleus	41.92	35.33
Os09t0508500-02	Rice	nucleus	38.08	34.41
Bra007702.1-P	Field mustard	nucleus	23.29	25.76
Bra019999.1-P	Field mustard	plastid	18.08	24.09
Bra030793.1-P	Field mustard	cytosol	16.71	21.94

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EnsemblPlantsGene:Bra025523	EnsemblPlants:Bra025523.1	EnsemblPlants:Bra025523.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	InterPro:IPR014720	UniProt:M4E9R7
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI00025450CB	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

AT5G41070 (E=3e-099) DRB5 | DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding

Coordinates

chrA04:+:8127496..8128768

Molecular Weight (calculated)

40197.4 Da

IEP (calculated)

10.044

GRAVY (calculated)

-0.638

Length

365 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCIREGPDHA PRFKASVNFN GEIFKSPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSYHFPAFS CTVELAGMSF TGESAKTKKQ AEKNAAIAAW SSLKKMASLD SMGGKENGEE KEQEVVARVL SRFKPKEVRR RETTNQWRRR
201: TSQQDTNKDL SERLRWINLL TYEPSKSQAS RTNLQQFKGI SLQEAKEETE MMITTKSFPL PVAAHHKARL NESSSGGCSN QIPFSDRGRF SFVGGCNRLA
301: PAVQIRSVIP VFAAPASKPN PTPSTSSSSS SSSSSINSCS VPKTPGLGGQ EKNLTQTKNV DQTHD

Best Arabidopsis Sequence Match ( AT5G41070.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS

Arabidopsis Description

DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.