Factsheet for Os09t0508500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0551100-01
Os02t0708400-01
Os03t0583900-01
Os05t0271300-00
Os05t0307400-01
Os09t0315050-00
Os09t0508500-02
Os11t0109900-01
Os12t0109900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41070.1	Os05t0307400-01	AT1G09700.1	15821876
AT5G41070.1	Os11t0109900-01	AT1G09700.1	15821876
AT5G41070.1	Os12t0109900-02	AT1G09700.1	15821876
AT5G41070.1	Os03t0583900-01	AT3G03300.1	15821876
AT5G41070.1	Os09t0315050-00	AT3G03300.1	15821876
AT5G41070.1	Os01t0551100-01	AT3G20420.1	21798944
AT5G41070.1	Os05t0271300-00	AT3G20420.1	21798944
AT5G41070.1	Os02t0708400-01	AT3G27960.1	21798944
AT5G41070.1	Os09t0508500-02	AT5G41070.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	45.3	51.69
TraesCS5B01G289100.1	Wheat	nucleus	42.82	47.27
TraesCS5A01G290100.2	Wheat	nucleus	42.33	47.11
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	43.07	43.07
Bra039103.1-P	Field mustard	nucleus	34.16	39.32
AT3G26932.2	Thale cress	nucleus	34.9	39.28
CDY12250	Canola	nucleus	33.91	39.03
CDY00177	Canola	nucleus	33.66	38.64
Bra025523.1-P	Field mustard	nucleus	34.41	38.08
CDY48959	Canola	nucleus	34.41	38.08
CDY28511	Canola	nucleus	35.15	37.67
Bra032962.1-P	Field mustard	nucleus	34.65	37.53
CDY34199	Canola	nucleus	34.65	37.53
CDY46403	Canola	nucleus	33.91	36.34
AT5G41070.1	Thale cress	nucleus	32.92	33.84
VIT_14s0068g01520.t01	Wine grape	nucleus	37.38	31.39
Os10t0480500-01	Rice	cytosol, nucleus, plastid	37.38	29.38
Os05t0150400-01	Rice	cytosol, nucleus	36.14	24.21
Os01t0772000-01	Rice	mitochondrion, nucleus	19.06	17.46
Os08t0384100-01	Rice	cytosol	12.87	16.67
Os05t0307400-01	Rice	cytosol	15.59	14.42
Os11t0109900-01	Rice	cytosol	15.35	13.11
Os12t0109900-02	Rice	cytosol	7.43	6.49

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	EntrezGene:4347527	EMBL:AB114419	EMBL:AK058408	EMBL:AK058662
UniProt:B7E321	ProteinID:BAF25537.1	ProteinID:BAT08885.1	ProteinID:BAT08886.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	EnsemblPlantsGene:Os09g0508500	EnsemblPlants:Os09t0508500-02	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF142	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000188AC84
RefSeq:XP_015610736.1	RefSeq:XP_015610737.1	InterPro:dsRBD_dom	SEG:seg	:	:

Description

DRB5Similar to Isoform 2 of Double-stranded RNA-binding protein 5. (Os09t0508500-01);Similar to Double-stranded RNA binding motif family protein. (Os09t0508500-02)

Coordinates

chr9:+:19710958..19712801

Molecular Weight (calculated)

43142.5 Da

IEP (calculated)

12.232

GRAVY (calculated)

-0.453

Length

404 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFSLPSY VCTREGPDHA PRFKATVTFN GETFDGPSNC TTLRQAEHAA AEVALARLSL RGPSSSLTAR VLDETGVYKN LLQETAHRAG
101: LKLPVYTTVR SGPGHSPVFS STVELAGMSF AGDPAKTKKH AEKNAAMAAW SSLKQSNIRT TVSPLVFDLV WIVCHGGDVF VVVWCSAGGA QGARRRRRRG
201: AGACGRRQGA RRAEAAGRLR RRRWRREGGG GVSTEEASRR RVLFVRHVAV QTSMGASVAA AAGGRTQDTA SPAPAAAAAS GGVRLPSRRR RAGARAEEGR
301: RAGAHAARRH AARQGGRRNA AADAVLLRAV LPPRRRRRPD EALRRRRRVP RAAGGERPFS DPGLRRATVA AAAAAQGGRS SDLIQEGVVV VKTSIQSIAQ
401: PAPI

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.