Factsheet for VIT_14s0068g01520.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g00920.t01
VIT_14s0066g01280.t01
VIT_14s0068g01520.t01
VIT_18s0001g07670.t01
VIT_19s0090g00940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41070.1	VIT_18s0001g07670.t01	AT1G09700.1	15821876
AT5G41070.1	VIT_04s0023g00920.t01	AT3G03300.1	15821876
AT5G41070.1	VIT_19s0090g00940.t01	AT3G20420.1	21798944
AT5G41070.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT5G41070.1	VIT_14s0068g01520.t01	AT5G41070.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12250	Canola	nucleus	36.59	50.14
Bra039103.1-P	Field mustard	nucleus	36.59	50.14
CDY00177	Canola	nucleus	36.17	49.43
AT3G26932.2	Thale cress	nucleus	36.8	49.3
AT5G41070.1	Thale cress	nucleus	39.92	48.85
Zm00001d006103_P001	Maize	cytosol, mitochondrion, nucleus, plastid	35.76	48.59
CDY48959	Canola	nucleus	36.59	48.22
Bra025523.1-P	Field mustard	nucleus	36.59	48.22
CDY28511	Canola	nucleus	37.21	47.48
Bra032962.1-P	Field mustard	nucleus	36.59	47.19
CDY34199	Canola	nucleus	36.59	47.19
CDY46403	Canola	nucleus	36.8	46.95
TraesCS5A01G290100.2	Wheat	nucleus	35.34	46.83
TraesCS5B01G289100.1	Wheat	nucleus	35.14	46.17
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	38.46	44.79
VIT_08s0056g01550.t01	Wine grape	plastid	15.18	43.98
TraesCS5D01G297600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	35.55	42.33
Os09t0508500-02	Rice	nucleus	31.39	37.38
VIT_14s0030g01280.t01	Wine grape	nucleus	38.25	31.94
VIT_05s0020g01850.t01	Wine grape	nucleus	41.58	24.21
VIT_14s0006g01440.t01	Wine grape	nucleus	12.89	18.62
VIT_18s0001g07670.t01	Wine grape	nucleus	14.76	17.75

Protein Annotations

EntrezGene:100254871	wikigene:100254871	Gene3D:3.30.160.20	MapMan:35.1	EMBL:AM430431	ProteinID:CAN71476
ProteinID:CAN71476.1	ProteinID:CBI21312	ProteinID:CBI21312.3	UniProt:D7SVL3	EMBL:FN595232	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	EntrezGene:LOC100254871	wikigene:LOC100254871
PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF115	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI00019849AB	ArrayExpress:VIT_14s0068g01520	EnsemblPlantsGene:VIT_14s0068g01520	EnsemblPlants:VIT_14s0068g01520.t01	RefSeq:XP_002275052	RefSeq:XP_002275052.2
RefSeq:XP_002275052.3	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:25235153..25236812

Molecular Weight (calculated)

52564.3 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.582

Length

481 amino acids

Sequence
(BLAST)

001: MFKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKASVNFN GEIFESPSYC TTLRQAEHAA AEVALNVLST RGPSRSLTAR VLDETGVYKN LLQETAHRAG
101: LNLPVYTTVR SGPGHVPVFT CTVELAGMNF TGESAKTKKQ AEKNAAIAAW SALKRVPNLG SLSHLSKEAE SREEQVVVAR VLSNFRSKDE SRPIRRWDQN
201: QARRRMVRGH GGSGSSSTSN NSQQFQKWRP MDLLMDSVPE GGTAQNQNCF VALLPPPPPR TASKILPPIS PRDTLSLYPS TRPIPVQAIG RSQVKMPEVP
301: TLLEEHQRDE EEWLDGKSNL IRKPTEKECP SNANASSVYG ANSIYRPFPL PNAGKLNTSL PDSPHQPHEQ THIKNNPFGN PTPSAMKGSA GIHIPRTMGT
401: GGFQPHRIAP AVQIRSVIPV CAAPPPPMRL PPSNHPTRNE ASPSALSASS SIPAHTGAGL KFNKPELYST QLSSEFNKLQ L

Best Arabidopsis Sequence Match ( AT5G41070.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS

Arabidopsis Description

DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.