Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G289100.1 | Wheat | nucleus | 96.97 | 96.17 |
| TraesCS5D01G297600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 96.97 | 87.13 |
| Zm00001d006103_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 69.42 | 71.19 |
| AT3G26932.2 | Thale cress | nucleus | 42.7 | 43.18 |
| Bra039103.1-P | Field mustard | nucleus | 41.6 | 43.02 |
| CDY12250 | Canola | nucleus | 41.32 | 42.73 |
| CDY00177 | Canola | nucleus | 41.32 | 42.61 |
| Os09t0508500-02 | Rice | nucleus | 47.11 | 42.33 |
| CDY28511 | Canola | nucleus | 42.7 | 41.11 |
| Bra025523.1-P | Field mustard | nucleus | 41.05 | 40.82 |
| CDY48959 | Canola | nucleus | 41.05 | 40.82 |
| Bra032962.1-P | Field mustard | nucleus | 41.87 | 40.75 |
| CDY34199 | Canola | nucleus | 41.87 | 40.75 |
| CDY46403 | Canola | nucleus | 40.22 | 38.73 |
| AT5G41070.1 | Thale cress | nucleus | 41.05 | 37.91 |
| VIT_14s0068g01520.t01 | Wine grape | nucleus | 46.83 | 35.34 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 40.5 | 27.95 |
| TraesCS1A01G091200.2 | Wheat | nucleus | 42.7 | 27.19 |
| TraesCS6A01G172500.1 | Wheat | cytosol | 14.88 | 19.01 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 8.54 | 17.61 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 18.18 | 16.22 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 20.66 | 12.36 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 18.73 | 12.23 |
| TraesCS5A01G149300.1 | Wheat | cytosol, plastid | 11.02 | 11.63 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G290100.2 | EnsemblPlantsGene:TraesCS5A01G290100 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF115 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:496608464..496609779
Molecular Weight (calculated)
39240.2 Da
IEP (calculated)
8.630
GRAVY (calculated)
-0.527
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKNQLQELA QRSCFSLPSY VCTREGPDHA PRFKATVTFN GETFHGPTCC TTLRQAEHAA AEVALARLST RGPSTYLTAR VLDETGVYKN LLQETAHRAG
101: LKLPAYTTVR SGPGHSPVFA SSVELAGLSF AGDAARTKKQ AEKNAAMTAW YALKQMPEAR KEPGNGCGGE EQEHVVVARV LAALKQRCDG NAASKQHCLA
201: GSSSSSAPNP SLYRHQWLPL SSHAAHPRTR HVQPQSQPAG PRILPPLHML QRPAPSTSRH GAELERQRRI DAAELVQMLE RAMVTNREEA MPSAPCYYPH
301: VPAYHHAGAA PRYFAAGGFH SPAMAVSVRS VIPVCSAPPQ PAAATKDDDD DDRNDNPAAP AEH
101: LKLPAYTTVR SGPGHSPVFA SSVELAGLSF AGDAARTKKQ AEKNAAMTAW YALKQMPEAR KEPGNGCGGE EQEHVVVARV LAALKQRCDG NAASKQHCLA
201: GSSSSSAPNP SLYRHQWLPL SSHAAHPRTR HVQPQSQPAG PRILPPLHML QRPAPSTSRH GAELERQRRI DAAELVQMLE RAMVTNREEA MPSAPCYYPH
301: VPAYHHAGAA PRYFAAGGFH SPAMAVSVRS VIPVCSAPPQ PAAATKDDDD DDRNDNPAAP AEH
001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN
Arabidopsis Description
DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.