Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 96.23 | 95.45 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 79.25 | 92.74 |
| TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 92.72 | 92.47 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 91.64 | 91.64 |
| HORVU7Hr1G115000.1 | Barley | nucleus | 43.94 | 86.7 |
| HORVU7Hr1G115100.2 | Barley | plastid | 88.41 | 80.39 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 66.04 | 77.29 |
| Zm00001d009879_P002 | Maize | plastid | 76.28 | 75.27 |
| KXG21693 | Sorghum | plastid | 74.12 | 62.22 |
| GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 52.02 | 56.6 |
| VIT_19s0090g00940.t01 | Wine grape | cytosol | 45.28 | 49.85 |
| GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 53.1 | 48.4 |
| Solyc10g006210.1.1 | Tomato | cytosol | 13.75 | 47.22 |
| GSMUA_Achr2P15170_001 | Banana | cytosol | 43.13 | 47.06 |
| PGSC0003DMT400033487 | Potato | cytosol | 43.94 | 44.41 |
| KRH14361 | Soybean | cytosol | 40.7 | 43.77 |
| CDY54644 | Canola | cytosol | 38.27 | 42.39 |
| Bra035784.1-P | Field mustard | cytosol | 38.27 | 42.39 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 43.13 | 40.92 |
| PGSC0003DMT400037378 | Potato | cytosol | 31.54 | 39.53 |
| CDY29825 | Canola | plastid | 38.27 | 37.87 |
| AT3G20420.1 | Thale cress | plastid | 39.08 | 37.08 |
| AT5G45150.1 | Thale cress | cytosol | 28.03 | 10.87 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.12 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 | PFAM:PF00636 | PFAM:PF14709 |
| PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf |
| SMART:SM00358 | SMART:SM00535 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCSU01G086900 | EnsemblPlants:TraesCSU01G086900.1 |
| TIGR:cd00048 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chrUn:-:77466876..77471339
Molecular Weight (calculated)
40731.2 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.121
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKPGSRKRL ASSPAPSAPV TLPPPGFVAD REEAAALVER LLQYEFNKRS LLEEALTHQF FSSGGAASYQ RLQFIGDAAL GLAFSNFLYL TNPTVGPGAL
101: STLRAANIST EKLARVAVRH DLYPLLRRNC PRLDLLVGQF IQSVKQELGD DLGTTPYGGT VFKAPKVLAD IVEAIAAAVY VDCNFNLEKL WKVTRFLFEP
201: IVTAETIDEQ PVFTLHELCQ KHGKDIKFKT WQKGGTTVVN VFVGGALVGM GSSEQMVIAK LNATRDALSK LLGGGNQQVL TIGVGHGSEV EVGELRECKQ
301: KLIEQCSRKH WPKPIFKLEK EEGPAHDRTF VYSVQVETQG GIWVTLSDNM SRVKDAENSG VQKVLEHLLK L
101: STLRAANIST EKLARVAVRH DLYPLLRRNC PRLDLLVGQF IQSVKQELGD DLGTTPYGGT VFKAPKVLAD IVEAIAAAVY VDCNFNLEKL WKVTRFLFEP
201: IVTAETIDEQ PVFTLHELCQ KHGKDIKFKT WQKGGTTVVN VFVGGALVGM GSSEQMVIAK LNATRDALSK LLGGGNQQVL TIGVGHGSEV EVGELRECKQ
301: KLIEQCSRKH WPKPIFKLEK EEGPAHDRTF VYSVQVETQG GIWVTLSDNM SRVKDAENSG VQKVLEHLLK L
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.