CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02487
CDY08216
CDY20269
CDY24170
CDY26148
CDY29825
CDY33093
CDY36943
CDY39688
CDY51405
CDY54644
CDY61477

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	CDY02487	AT1G54060.1	21798944
AT3G20420.1	CDY08216	AT1G54060.1	21798944
AT3G20420.1	CDY26148	AT1G54060.1	21798944
AT3G20420.1	CDY33093	AT1G54060.1	21798944
AT3G20420.1	CDY51405	AT1G54060.1	21798944
AT3G20420.1	CDY61477	AT1G54060.1	21798944
AT3G20420.1	CDY20269	AT2G24030.1	21798944
AT3G20420.1	CDY39688	AT2G24030.1	21798944
AT3G20420.1	CDY29825	AT3G20420.1	21798944
AT3G20420.1	CDY54644	AT3G20420.1	21798944
AT3G20420.1	CDY24170	AT3G47620.1	21798944
AT3G20420.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54644	Canola	cytosol	86.4	96.72
AT3G20420.1	Thale cress	plastid	72.53	69.57
VIT_19s0090g00940.t01	Wine grape	cytosol	48.27	53.71
KRH14361	Soybean	cytosol	48.0	52.17
PGSC0003DMT400033487	Potato	cytosol	45.6	46.59
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	40.53	44.57
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	46.13	44.25
GSMUA_Achr2P15170_001	Banana	cytosol	38.93	42.94
Os05t0271300-00	Rice	cytosol, nucleus, plastid	36.0	42.59
TraesCS7A01G513500.1	Wheat	nucleus	34.93	41.32
TraesCS7A01G512700.1	Wheat	mitochondrion	39.2	40.5
Zm00001d009879_P002	Maize	plastid	40.27	40.16
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	39.73	40.05
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	39.2	39.95
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	39.47	39.89
TraesCS7D01G504300.3	Wheat	mitochondrion	39.2	39.73
TraesCS7B01G428200.1	Wheat	mitochondrion	38.67	39.73
TraesCS7B01G430900.2	Wheat	mitochondrion	39.47	39.57
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	41.6	38.33
TraesCSU01G086900.1	Wheat	mitochondrion	37.87	38.27
HORVU7Hr1G115100.2	Barley	plastid	39.73	36.52
HORVU7Hr1G115000.1	Barley	nucleus	17.87	35.64
KXG21693	Sorghum	plastid	40.53	34.39
CDY09765	Canola	cytosol, nucleus, peroxisome	24.8	32.75
CDX90592	Canola	cytosol, nucleus, peroxisome	24.8	32.75
Os01t0551100-01	Rice	cytosol	22.13	32.42
CDY22924	Canola	cytosol	24.0	31.8
CDY48286	Canola	cytosol	23.73	31.45
CDY30942	Canola	nucleus	25.6	7.61
CDY21223	Canola	nucleus	26.67	6.53
CDY15207	Canola	nucleus	29.87	6.19
CDX90002	Canola	nucleus	29.6	6.13
CDX92469	Canola	nucleus, plastid	25.07	5.72
CDY50692	Canola	nucleus	21.07	5.69
CDY35811	Canola	nucleus	24.8	5.67
CDY43132	Canola	cytosol, nucleus, plastid	20.53	5.55
CDY50691	Canola	nucleus	0.8	0.53

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:A0A078GTK7	UniProt:A0A078GTK7	EnsemblPlants:CDY29825
ProteinID:CDY29825	ProteinID:CDY29825.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00043719001
InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	PFAM:PF00035	PFAM:PF00636	PFAM:PF14709
ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom
InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI0004EEFB47
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

BnaC05g31650DBnaC05g31650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTK7]

Coordinates

chrLK032244:-:394060..395895

Molecular Weight (calculated)

42460.8 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.344

Length

375 amino acids

Sequence
(BLAST)

001: MDRLIRFFSP DFNSPTITPS NFSPSVNYRA ITRPPLSPEK MESLQAVEKI VNYSFANKSL LEEALTHTSC VDFPSYERLE FVGDSAIGLA LTNYLYLTYP
101: NAEPHELSQL RAANVSTEKF ARVALKHGLY RFLRRNAPSL DEKVTEFSEA VCKEDDSVYY GGLVKAPKVL ADLLESVAGA VYIDVNFDLQ RFWVIFRGLL
201: EPIFTLDDLQ QQPQPISMLF QLCHKHGKRL AIRYLKEGKR NIAGVYLDDE FFASGSAENK DTAKLLAAKE ALGKFSECSP IAMVIDEGNV EVDLEDAKRK
301: LYEICSKKKW PKPIYSIEEE RGSANGKRFV CSARIKIPSE ESPLYMKGDE ESKKKKAENS SAYHMIIALR KSNYL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.