Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra019456.1-P | Field mustard | nucleus | 99.37 | 86.59 |
CDY21223 | Canola | nucleus | 95.72 | 78.84 |
AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 81.44 | 65.0 |
GSMUA_Achr10P... | Banana | nucleus | 24.98 | 47.51 |
Solyc08g067210.2.1 | Tomato | nucleus | 47.82 | 42.17 |
KRH52276 | Soybean | cytosol | 16.49 | 41.35 |
TraesCS1B01G177600.1 | Wheat | nucleus | 33.78 | 41.12 |
KRH61605 | Soybean | nucleus | 49.17 | 37.04 |
VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 52.34 | 33.97 |
Zm00001d042432_P007 | Maize | cytosol | 43.14 | 32.61 |
KXG33962 | Sorghum | nucleus | 42.82 | 32.59 |
Os01t0909200-01 | Rice | cytosol | 41.95 | 32.04 |
CDX90592 | Canola | cytosol, nucleus, peroxisome | 7.14 | 31.69 |
GSMUA_Achr5P10880_001 | Banana | cytosol | 39.89 | 31.48 |
TraesCS3D01G411200.6 | Wheat | nucleus | 40.76 | 31.46 |
TraesCS3A01G415400.2 | Wheat | nucleus | 41.79 | 31.41 |
CDY09765 | Canola | cytosol, nucleus, peroxisome | 7.06 | 31.34 |
TraesCS1A01G160900.1 | Wheat | nucleus | 40.36 | 31.28 |
TraesCS3B01G450600.3 | Wheat | nucleus | 41.55 | 31.25 |
HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 41.55 | 31.1 |
TraesCS1D01G158000.2 | Wheat | nucleus | 39.89 | 30.9 |
Os10t0485600-01 | Rice | cytosol, plastid | 39.89 | 30.73 |
OQU91611 | Sorghum | nucleus, plastid | 39.89 | 30.73 |
Zm00001d032655_P006 | Maize | nucleus | 37.67 | 30.25 |
CDY22924 | Canola | cytosol | 6.74 | 30.04 |
CDY48286 | Canola | cytosol | 6.66 | 29.68 |
HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 39.57 | 29.65 |
CDY54644 | Canola | cytosol | 7.45 | 28.06 |
GSMUA_Achr10P... | Banana | cytosol | 9.36 | 27.9 |
CDY29825 | Canola | plastid | 7.61 | 25.6 |
CDY50692 | Canola | nucleus | 23.39 | 21.24 |
CDY43132 | Canola | cytosol, nucleus, plastid | 23.31 | 21.18 |
CDX90002 | Canola | nucleus | 28.87 | 20.09 |
CDY15207 | Canola | nucleus | 28.79 | 20.07 |
CDY35811 | Canola | nucleus | 26.01 | 19.99 |
CDX92469 | Canola | nucleus, plastid | 25.85 | 19.85 |
CDY50691 | Canola | nucleus | 5.55 | 12.48 |
Protein Annotations
Gene3D:1.10.1520.10 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | GO:A0A078H0D8 |
UniProt:A0A078H0D8 | EnsemblPlants:CDY30942 | ProteinID:CDY30942 | ProteinID:CDY30942.1 | ncoils:Coil | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0031047 |
GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00046505001 | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
InterPro:IPR003100 | InterPro:IPR036389 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 |
PFAM:PF00636 | PFAM:PF02170 | ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51194 |
PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 | SMART:SM00949 |
SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF69065 | UniParc:UPI0004EE2F7E | SEG:seg | : |
Description
BnaA06g19710DBnaA06g19710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0D8]
Coordinates
chrLK032264:-:280131..285224
Molecular Weight (calculated)
141604.0 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.285
Length
1261 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLCNCQDVE ENKFKAYQKR LSADYHDILH CLDSLGLICA HLAAEICLEK ISETETYNEC SMVCKEFLSD VLSTLGLFLQ KEEKNSVDLP QDNPSAVISG
0101: LVSPKLQELF HLLDSLRGEM QKPCLIIVER IITAEVIERY VKKQASLGYL YVLSLIGNNA STQALAQKMQ DSFHVGKVNL VFITDVVEEG FHMPDCSCMV
0201: CFDLPKTVCS YSQSQELAKQ SNSKSIMFLE RGNPSQRDHL YDLMRRQVPK ETPNQANCQD LKENGATVHD EPAPKEQSAN KRLRQLQVLD KNLLQCSAKE
0301: KAPSSKSKSS ASAAGSKKRK ELHGTTRANA LSGIWGENLD GAIFQAYKLD FWSNISGDAY SSFSLLIEST LADDVGNVEM SLYLVRKYIK ASVSHCGQIR
0401: LSHEEIVKAK CFQQFFFNGM FGKLFVGSKS LGTKREFLLQ TDTSSLWHPS FMFLMLPVET GDLVSSATVD WSAINSCACV VDFLKKNPLL ELQVGEENHC
0501: NTSSGQEGTQ KKETETNLIH FANALSDKNS IEEIVVIAIH TGRIYSIVEA VKDSSAMSPF EDEASLEYAT YAEYFNKKYG IVLAHPNQPL LKLKQSHHAH
0601: NLLVNFSDEV IEKKEPNVSN VRKTKPNIHA HLPPELLVRI DVPRSVTKSI YLLPSVMHRL ESLMLASQLR EEIDCSIENF SISSTSVLEA LTTLTSAEAF
0701: SMERLELLGD SVLKYVVSCS LYLKYPNKDE GQLSRERQSI ISNSNLHRLA TDRKLQGYIR NGAFEPRRWT APGQCSLFPV PCKCGIDSRE VPLEARFFTE
0801: NMTIKIGKSC DMGHRWTVSK SVSDCAEALI GAYYVSGGLT AALHMMKWLG FDVEFDRELV NEAINRVSLR CYIPKDDELT ELETKIRREF SSKFLLKEAI
0901: THSSVHESYS YERLEFLGDS VLDFLITRHL FNTYEKTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIK EYLMSFSEPD ETGRTIPSIQ
1001: GPKALGDVVE SIAGALLIDT RLDLEEVWRV FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCVND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL
1101: GKAASHLLKQ LEMRKISRKT GNGDDQSSMD IKLACNLSDR ETPSSDSVEM QGTVVPVIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTLE DKSRTPFEFT
1201: DGNEKRTSFS SFISTITLRI PNREAVMYSG EARPDKKSSF DSAVVELLYE LERRMILTIK K
0101: LVSPKLQELF HLLDSLRGEM QKPCLIIVER IITAEVIERY VKKQASLGYL YVLSLIGNNA STQALAQKMQ DSFHVGKVNL VFITDVVEEG FHMPDCSCMV
0201: CFDLPKTVCS YSQSQELAKQ SNSKSIMFLE RGNPSQRDHL YDLMRRQVPK ETPNQANCQD LKENGATVHD EPAPKEQSAN KRLRQLQVLD KNLLQCSAKE
0301: KAPSSKSKSS ASAAGSKKRK ELHGTTRANA LSGIWGENLD GAIFQAYKLD FWSNISGDAY SSFSLLIEST LADDVGNVEM SLYLVRKYIK ASVSHCGQIR
0401: LSHEEIVKAK CFQQFFFNGM FGKLFVGSKS LGTKREFLLQ TDTSSLWHPS FMFLMLPVET GDLVSSATVD WSAINSCACV VDFLKKNPLL ELQVGEENHC
0501: NTSSGQEGTQ KKETETNLIH FANALSDKNS IEEIVVIAIH TGRIYSIVEA VKDSSAMSPF EDEASLEYAT YAEYFNKKYG IVLAHPNQPL LKLKQSHHAH
0601: NLLVNFSDEV IEKKEPNVSN VRKTKPNIHA HLPPELLVRI DVPRSVTKSI YLLPSVMHRL ESLMLASQLR EEIDCSIENF SISSTSVLEA LTTLTSAEAF
0701: SMERLELLGD SVLKYVVSCS LYLKYPNKDE GQLSRERQSI ISNSNLHRLA TDRKLQGYIR NGAFEPRRWT APGQCSLFPV PCKCGIDSRE VPLEARFFTE
0801: NMTIKIGKSC DMGHRWTVSK SVSDCAEALI GAYYVSGGLT AALHMMKWLG FDVEFDRELV NEAINRVSLR CYIPKDDELT ELETKIRREF SSKFLLKEAI
0901: THSSVHESYS YERLEFLGDS VLDFLITRHL FNTYEKTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIK EYLMSFSEPD ETGRTIPSIQ
1001: GPKALGDVVE SIAGALLIDT RLDLEEVWRV FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCVND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL
1101: GKAASHLLKQ LEMRKISRKT GNGDDQSSMD IKLACNLSDR ETPSSDSVEM QGTVVPVIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTLE DKSRTPFEFT
1201: DGNEKRTSFS SFISTITLRI PNREAVMYSG EARPDKKSSF DSAVVELLYE LERRMILTIK K
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE TYQKRLSIDY
0301: REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH LLDSFRGDKQ
0401: KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT MCSYSQSQKH
0501: AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP PCKKLRLDNN
0601: LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL YLVRKLVKAS
0701: VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE FLKKNSLLDL
0801: RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI VLAHPNQPLM
0901: KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS ISSTSILEAV
1001: TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP CKCGIDTREV
1101: PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE LERKIQHEFS
1201: AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND YLMSFQKPDE
1301: TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ LDDVLLTGDG
1401: SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW PMPTFDTSEE
1501: KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE TYQKRLSIDY
0301: REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH LLDSFRGDKQ
0401: KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT MCSYSQSQKH
0501: AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP PCKKLRLDNN
0601: LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL YLVRKLVKAS
0701: VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE FLKKNSLLDL
0801: RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI VLAHPNQPLM
0901: KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS ISSTSILEAV
1001: TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP CKCGIDTREV
1101: PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE LERKIQHEFS
1201: AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND YLMSFQKPDE
1301: TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ LDDVLLTGDG
1401: SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW PMPTFDTSEE
1501: KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.