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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019456.1-P Field mustard nucleus 99.37 86.59
CDY21223 Canola nucleus 95.72 78.84
AT3G43920.2 Thale cress cytosol, nucleus, plastid 81.44 65.0
GSMUA_Achr10P... Banana nucleus 24.98 47.51
Solyc08g067210.2.1 Tomato nucleus 47.82 42.17
KRH52276 Soybean cytosol 16.49 41.35
TraesCS1B01G177600.1 Wheat nucleus 33.78 41.12
KRH61605 Soybean nucleus 49.17 37.04
VIT_04s0008g02170.t01 Wine grape mitochondrion 52.34 33.97
Zm00001d042432_P007 Maize cytosol 43.14 32.61
KXG33962 Sorghum nucleus 42.82 32.59
Os01t0909200-01 Rice cytosol 41.95 32.04
CDX90592 Canola cytosol, nucleus, peroxisome 7.14 31.69
GSMUA_Achr5P10880_001 Banana cytosol 39.89 31.48
TraesCS3D01G411200.6 Wheat nucleus 40.76 31.46
TraesCS3A01G415400.2 Wheat nucleus 41.79 31.41
CDY09765 Canola cytosol, nucleus, peroxisome 7.06 31.34
TraesCS1A01G160900.1 Wheat nucleus 40.36 31.28
TraesCS3B01G450600.3 Wheat nucleus 41.55 31.25
HORVU3Hr1G092430.9 Barley cytosol, nucleus, plastid 41.55 31.1
TraesCS1D01G158000.2 Wheat nucleus 39.89 30.9
Os10t0485600-01 Rice cytosol, plastid 39.89 30.73
OQU91611 Sorghum nucleus, plastid 39.89 30.73
Zm00001d032655_P006 Maize nucleus 37.67 30.25
CDY22924 Canola cytosol 6.74 30.04
CDY48286 Canola cytosol 6.66 29.68
HORVU1Hr1G042710.5 Barley cytosol, mitochondrion, nucleus 39.57 29.65
CDY54644 Canola cytosol 7.45 28.06
GSMUA_Achr10P... Banana cytosol 9.36 27.9
CDY29825 Canola plastid 7.61 25.6
CDY50692 Canola nucleus 23.39 21.24
CDY43132 Canola cytosol, nucleus, plastid 23.31 21.18
CDX90002 Canola nucleus 28.87 20.09
CDY15207 Canola nucleus 28.79 20.07
CDY35811 Canola nucleus 26.01 19.99
CDX92469 Canola nucleus, plastid 25.85 19.85
CDY50691 Canola nucleus 5.55 12.48
Protein Annotations
Gene3D:1.10.1520.10MapMan:12.5.1.8Gene3D:2.170.260.10Gene3D:3.30.160.20Gene3D:3.40.50.300GO:A0A078H0D8
UniProt:A0A078H0D8EnsemblPlants:CDY30942ProteinID:CDY30942ProteinID:CDY30942.1ncoils:CoilGO:GO:0003674
GO:GO:0003824GO:GO:0004518GO:GO:0004525GO:GO:0005488GO:GO:0005515GO:GO:0006139
GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0031047
GO:GO:0090501GO:GO:0090502EnsemblPlantsGene:GSBRNA2T00046505001InterPro:Helicase_CInterPro:IPR000999InterPro:IPR001650
InterPro:IPR003100InterPro:IPR036389InterPro:P-loop_NTPaseInterPro:PAZ_domInterPro:PAZ_dom_sfPFAM:PF00271
PFAM:PF00636PFAM:PF02170ScanProsite:PS00517PFscan:PS50142PFscan:PS50821PFscan:PS51194
PANTHER:PTHR14950PANTHER:PTHR14950:SF31InterPro:RNase_III_domInterPro:RNase_III_sfSMART:SM00535SMART:SM00949
SUPFAM:SSF101690SUPFAM:SSF52540SUPFAM:SSF69065UniParc:UPI0004EE2F7ESEG:seg:
Description
BnaA06g19710DBnaA06g19710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0D8]
Coordinates
chrLK032264:-:280131..285224
Molecular Weight (calculated)
141604.0 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.285
Length
1261 amino acids
Sequence
(BLAST)
0001: MLLCNCQDVE ENKFKAYQKR LSADYHDILH CLDSLGLICA HLAAEICLEK ISETETYNEC SMVCKEFLSD VLSTLGLFLQ KEEKNSVDLP QDNPSAVISG
0101: LVSPKLQELF HLLDSLRGEM QKPCLIIVER IITAEVIERY VKKQASLGYL YVLSLIGNNA STQALAQKMQ DSFHVGKVNL VFITDVVEEG FHMPDCSCMV
0201: CFDLPKTVCS YSQSQELAKQ SNSKSIMFLE RGNPSQRDHL YDLMRRQVPK ETPNQANCQD LKENGATVHD EPAPKEQSAN KRLRQLQVLD KNLLQCSAKE
0301: KAPSSKSKSS ASAAGSKKRK ELHGTTRANA LSGIWGENLD GAIFQAYKLD FWSNISGDAY SSFSLLIEST LADDVGNVEM SLYLVRKYIK ASVSHCGQIR
0401: LSHEEIVKAK CFQQFFFNGM FGKLFVGSKS LGTKREFLLQ TDTSSLWHPS FMFLMLPVET GDLVSSATVD WSAINSCACV VDFLKKNPLL ELQVGEENHC
0501: NTSSGQEGTQ KKETETNLIH FANALSDKNS IEEIVVIAIH TGRIYSIVEA VKDSSAMSPF EDEASLEYAT YAEYFNKKYG IVLAHPNQPL LKLKQSHHAH
0601: NLLVNFSDEV IEKKEPNVSN VRKTKPNIHA HLPPELLVRI DVPRSVTKSI YLLPSVMHRL ESLMLASQLR EEIDCSIENF SISSTSVLEA LTTLTSAEAF
0701: SMERLELLGD SVLKYVVSCS LYLKYPNKDE GQLSRERQSI ISNSNLHRLA TDRKLQGYIR NGAFEPRRWT APGQCSLFPV PCKCGIDSRE VPLEARFFTE
0801: NMTIKIGKSC DMGHRWTVSK SVSDCAEALI GAYYVSGGLT AALHMMKWLG FDVEFDRELV NEAINRVSLR CYIPKDDELT ELETKIRREF SSKFLLKEAI
0901: THSSVHESYS YERLEFLGDS VLDFLITRHL FNTYEKTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIK EYLMSFSEPD ETGRTIPSIQ
1001: GPKALGDVVE SIAGALLIDT RLDLEEVWRV FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCVND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL
1101: GKAASHLLKQ LEMRKISRKT GNGDDQSSMD IKLACNLSDR ETPSSDSVEM QGTVVPVIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTLE DKSRTPFEFT
1201: DGNEKRTSFS SFISTITLRI PNREAVMYSG EARPDKKSSF DSAVVELLYE LERRMILTIK K
Best Arabidopsis Sequence Match ( AT3G43920.3 )
(BLAST)
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE TYQKRLSIDY
0301: REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH LLDSFRGDKQ
0401: KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT MCSYSQSQKH
0501: AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP PCKKLRLDNN
0601: LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL YLVRKLVKAS
0701: VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE FLKKNSLLDL
0801: RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI VLAHPNQPLM
0901: KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS ISSTSILEAV
1001: TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP CKCGIDTREV
1101: PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE LERKIQHEFS
1201: AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND YLMSFQKPDE
1301: TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ LDDVLLTGDG
1401: SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW PMPTFDTSEE
1501: KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.