Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 24.96 | 53.85 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 35.66 | 49.23 |
| GSMUA_Achr10P... | Banana | cytosol | 14.41 | 48.7 |
| CDY30942 | Canola | nucleus | 42.17 | 47.82 |
| KRH52276 | Soybean | cytosol | 16.5 | 46.92 |
| KRH61605 | Soybean | nucleus | 53.29 | 45.52 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 60.28 | 44.36 |
| Bra019456.1-P | Field mustard | nucleus | 42.45 | 41.95 |
| Os01t0909200-01 | Rice | cytosol | 48.11 | 41.67 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 46.78 | 41.12 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 46.57 | 40.91 |
| Os10t0485600-01 | Rice | cytosol, plastid | 46.64 | 40.75 |
| KXG33962 | Sorghum | nucleus | 46.78 | 40.37 |
| Zm00001d032655_P006 | Maize | nucleus | 44.2 | 40.25 |
| CDY21223 | Canola | nucleus | 43.08 | 40.24 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 44.41 | 40.19 |
| OQU91611 | Sorghum | nucleus, plastid | 45.94 | 40.13 |
| Zm00001d042432_P007 | Maize | cytosol | 46.71 | 40.05 |
| TraesCS3A01G415400.2 | Wheat | nucleus | 46.92 | 39.99 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 44.69 | 39.99 |
| TraesCS3D01G411200.6 | Wheat | nucleus | 45.38 | 39.72 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 46.57 | 39.71 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 46.5 | 39.51 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 45.8 | 38.87 |
| Solyc10g006210.1.1 | Tomato | cytosol | 2.73 | 36.11 |
| Solyc05g041920.2.1 | Tomato | cytosol | 5.1 | 27.44 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 5.45 | 26.62 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 7.27 | 26.6 |
| Solyc07g049150.2.1 | Tomato | cytosol | 4.9 | 26.12 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 23.99 | 26.04 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 24.34 | 25.74 |
| Solyc06g048960.2.1 | Tomato | vacuole | 24.76 | 25.3 |
| Solyc07g005030.2.1 | Tomato | cytosol | 26.92 | 25.07 |
| Solyc05g024210.1.1 | Tomato | cytosol | 5.8 | 24.7 |
| Solyc11g008520.1.1 | Tomato | nucleus | 24.48 | 24.51 |
| Solyc10g005130.2.1 | Tomato | nucleus | 29.16 | 22.09 |
| Solyc08g067200.1.1 | Tomato | cytosol | 1.19 | 5.84 |
Protein Annotations
Description
Endoribonuclease Dicer homolog 3 [Source:Projected from Arabidopsis thaliana (AT3G43920) UniProtKB/Swiss-Prot;Acc:Q9LXW7]
Coordinates
chr8:+:56225661..56253961
Molecular Weight (calculated)
160388.0 Da
IEP (calculated)
6.905
GRAVY (calculated)
-0.192
Length
1430 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATSTCELIW LKQLLRELKF GEINQMELVC DNQAALYIAS NLFDAALADL KLSLPSQYKD TDDIYKKLRK RLSNCYAKIL CCLENLGIIC AYEAVKICLE
0101: NVPNDKDENE ILRTSSLQHR YFLEEALSIV QESMPQDCES LFDVGYDLSA TLSMGHISSK LQVLLEIFQL LGKATQVRCL IFVERIITAK VIERVMKKMT
0201: WFSHFTIAYL TGTNTSVDAL TRKAQKETLG SFLSGKVNLL FATDVVEEGI DVPHCSSVIR FDLPKTVRSY VQSRGRARQT ESQYILMLER GNKKQREQMF
0301: DIIRSEYSMT DTAIKRDPDD SVVKPCLVKE TKAYYVEATG ASVTADSSVS VLTKYCEMLP GDKFFSPKPV FQYILSGELY RCKLTLPPNA ALQTIVGPEC
0401: RSSQLSRQLV CLDACKKLHQ IGALNDHLLP FNEKPPRGGS DVQDRKLGAG TTKLKELHGT ACISALSGSW GNDPNGEVYQ VYKMNFLCNI KEVKYSSFIL
0501: LLQSELDYDV GNVEVELFLV SKFVESSVSH CGKVHLDSQQ VAKAKIFQEL FFNGLFGKLF IKSSCGRKFL LDTEKSLWEP SNMYLLLPLD PLDSSCEPYR
0601: VDWEAIESSV SVVEFLKKNG WLSKEKSEAK RKNSLVDRTA SFVEDIDQTD LIHFANMSIS RSKIMDMVVV AIHTGRIYSV LEAVANSSAE SPFEVDSEAT
0701: VAPFSSFADY FHKKYGIVLV YPGQPLLLLK QSHNAYNLLV DFKKEGISCG PKSKDSTMVV KKPLNNVHMP PELLVCFDIR LDILKSFYLL PSLMHRLASL
0801: MLASQLRKDI SSHSGDLHIS SSLILEALTT LRCNESFSME RLELLGDSVL KYAVSCYLFL KYPKKHEGQL TNERSQAISN SALHKLGTNQ HLQGYIRDGA
0901: FDPRRWTAPG QLSLWLCPCE HGVETSQVPL DKKFLTEDPK EVVGKHCDRG HRWMGSKTIS DCVEALIGAY YVGGGFVAAL KLMKWLGFKA ELEPSLVEDA
1001: INTASLYSYT PKAKDIEDLE LKLAYKFSIK GLLLEAITHA TVQELEAGYS YQRLEFLGDS VLDILVTWYL YQKHKDIDPG ELTDLRSASV NNDNFAYAAV
1101: RRNLHVHLQH HSGCLESEIS LFVKSVSNSD SLQGNKAPKV LGDLVESIAG AVLIDTKLNL DEVWKIFKPL LSPIVTPDKL ELPPFRELIE LCDSLGYFFK
1201: EHCVMKGDTV NAELRLQLID DLLIAEGSGQ TRKNAKAQAA LKLLKNLEKK GISFKKKKEE ASFVDVPQSL DFDGDICIQA NTSCPDMASR KKRKKVYLNN
1301: KTDEAQSVPS DCSTSSSYSN KDTQVIGPIN MTRGGPRISL FELCKKLQWP MPSFESTERT SKSLIECGEG SDKRKVYNTF ASRISLTIPD YGLIELTGDE
1401: RADKKSSLDS AALHMLYELE RQGKIAIGNQ
0101: NVPNDKDENE ILRTSSLQHR YFLEEALSIV QESMPQDCES LFDVGYDLSA TLSMGHISSK LQVLLEIFQL LGKATQVRCL IFVERIITAK VIERVMKKMT
0201: WFSHFTIAYL TGTNTSVDAL TRKAQKETLG SFLSGKVNLL FATDVVEEGI DVPHCSSVIR FDLPKTVRSY VQSRGRARQT ESQYILMLER GNKKQREQMF
0301: DIIRSEYSMT DTAIKRDPDD SVVKPCLVKE TKAYYVEATG ASVTADSSVS VLTKYCEMLP GDKFFSPKPV FQYILSGELY RCKLTLPPNA ALQTIVGPEC
0401: RSSQLSRQLV CLDACKKLHQ IGALNDHLLP FNEKPPRGGS DVQDRKLGAG TTKLKELHGT ACISALSGSW GNDPNGEVYQ VYKMNFLCNI KEVKYSSFIL
0501: LLQSELDYDV GNVEVELFLV SKFVESSVSH CGKVHLDSQQ VAKAKIFQEL FFNGLFGKLF IKSSCGRKFL LDTEKSLWEP SNMYLLLPLD PLDSSCEPYR
0601: VDWEAIESSV SVVEFLKKNG WLSKEKSEAK RKNSLVDRTA SFVEDIDQTD LIHFANMSIS RSKIMDMVVV AIHTGRIYSV LEAVANSSAE SPFEVDSEAT
0701: VAPFSSFADY FHKKYGIVLV YPGQPLLLLK QSHNAYNLLV DFKKEGISCG PKSKDSTMVV KKPLNNVHMP PELLVCFDIR LDILKSFYLL PSLMHRLASL
0801: MLASQLRKDI SSHSGDLHIS SSLILEALTT LRCNESFSME RLELLGDSVL KYAVSCYLFL KYPKKHEGQL TNERSQAISN SALHKLGTNQ HLQGYIRDGA
0901: FDPRRWTAPG QLSLWLCPCE HGVETSQVPL DKKFLTEDPK EVVGKHCDRG HRWMGSKTIS DCVEALIGAY YVGGGFVAAL KLMKWLGFKA ELEPSLVEDA
1001: INTASLYSYT PKAKDIEDLE LKLAYKFSIK GLLLEAITHA TVQELEAGYS YQRLEFLGDS VLDILVTWYL YQKHKDIDPG ELTDLRSASV NNDNFAYAAV
1101: RRNLHVHLQH HSGCLESEIS LFVKSVSNSD SLQGNKAPKV LGDLVESIAG AVLIDTKLNL DEVWKIFKPL LSPIVTPDKL ELPPFRELIE LCDSLGYFFK
1201: EHCVMKGDTV NAELRLQLID DLLIAEGSGQ TRKNAKAQAA LKLLKNLEKK GISFKKKKEE ASFVDVPQSL DFDGDICIQA NTSCPDMASR KKRKKVYLNN
1301: KTDEAQSVPS DCSTSSSYSN KDTQVIGPIN MTRGGPRISL FELCKKLQWP MPSFESTERT SKSLIECGEG SDKRKVYNTF ASRISLTIPD YGLIELTGDE
1401: RADKKSSLDS AALHMLYELE RQGKIAIGNQ
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGYELKV YEVAKNRNII AVLGTGIDKS EITKRLIKAM GSSDTDKRLI IFLAPTVNLV
0101: KQQCCEIRAL VNLKVEEYFG AKGVDKWTSQ RWDEEFSKHD VLVMTPQILL DVLRSAFLKL EMVCLLIIDE CHHTTGNHPY AKLMKEFYHE STSKPKIFGL
0201: TASAVIRKAQ VSELERLMDS KIFNPEEREG VEKFATTVKE GPILYNPSPS CSLELKEKLE TSHLKFDASL RRLQELGKDS FLNMDNKFET YQKRLSIDYR
0301: EILHCLDNLG LICAHLAAEV CLEKISDTKE ESETYKECSM VCKEFLEDIL STIGVYLPQD DKSLVDLQQN HLSAVISGHV SPKLKELFHL LDSFRGDKQK
0401: QCLILVERII TAKVIERFVK KEASLAYLNV LYLTENNPST NVSAQKMQIE IPDLFQHGKV NLLFITDVVE EGFQVPDCSC MVCFDLPKTM CSYSQSQKHA
0501: KQSNSKSIMF LERGNPKQRD HLHDLMRREV LIQDPEAPNL KSCPPPVKNG HGVKEIGSMV IPDSNITVSE EAASTQTMSD PPSRNEQLPP CKKLRLDNNL
0601: LQSNGKEKVA SSKSKSSSSA AGSKKRKELH GTTCANALSG TWGENIDGAT FQAYKFDFCC NISGEVYSSF SLLLESTLAE DVGKVEMDLY LVRKLVKASV
0701: SPCGQIRLSQ EELVKAKYFQ QFFFNGMFGK LFVGSKSQGT KREFLLQTDT SSLWHPAFMF LLLPVETNDL ASSATIDWSA INSCASIVEF LKKNSLLDLR
0801: DSDGNQCNTS SGQEVLLDDK MEETNLIHFA NASSDKNSLE ELVVIAIHTG RIYSIVEAVS DSSAMSPFEV DASSGYATYA EYFNKKYGIV LAHPNQPLMK
0901: LKQSHHAHNL LVDFNEEMVV KTEPKAGNVR KRKPNIHAHL PPELLARIDV PRAVLKSIYL LPSVMHRLES LMLASQLREE IDCSIDNFSI SSTSILEAVT
1001: TLTCPESFSM ERLELLGDSV LKYVASCHLF LKYPDKDEGQ LSRQRQSIIS NSNLHRLTTS RKLQGYIRNG AFEPRRWTAP GQFSLFPVPC KCGIDTREVP
1101: LDPKFFTENM TIKIGKSCDM GHRWVVSKSV SDCAEALIGA YYVSGGLSAS LHMMKWLGID VDFDPNLVVE AINRVSLRCY IPKEDELIEL ERKIQHEFSA
1201: KFLLKEAITH SSLRESYSYE RLEFLGDSVL DFLITRHLFN TYEQTGPGEM TDLRSACVNN ENFAQVAVKN NLHTHLQRCA TVLETQINDY LMSFQKPDET
1301: GRSIPSIQGP KALGDVVESI AGALLIDTRL DLDQVWRVFE PLLSPLVTPD KLQLPPYREL NELCDSLGYF FRVKCSNDGV KAQATIQLQL DDVLLTGDGS
1401: EQTNKLALGK AASHLLTQLE KRNISRKTSL GDNQSSMDVN LACNHSDRET LTSETTEIQS IVIPFIGPIN MKKGGPRGTL HEFCKKHLWP MPTFDTSEEK
1501: SRTPFEFIDG GEKRTSFSSF TSTITLRIPN REAVMYAGEA RPDKKSSFDS AVVELLYELE RRKIVIIQK
0101: KQQCCEIRAL VNLKVEEYFG AKGVDKWTSQ RWDEEFSKHD VLVMTPQILL DVLRSAFLKL EMVCLLIIDE CHHTTGNHPY AKLMKEFYHE STSKPKIFGL
0201: TASAVIRKAQ VSELERLMDS KIFNPEEREG VEKFATTVKE GPILYNPSPS CSLELKEKLE TSHLKFDASL RRLQELGKDS FLNMDNKFET YQKRLSIDYR
0301: EILHCLDNLG LICAHLAAEV CLEKISDTKE ESETYKECSM VCKEFLEDIL STIGVYLPQD DKSLVDLQQN HLSAVISGHV SPKLKELFHL LDSFRGDKQK
0401: QCLILVERII TAKVIERFVK KEASLAYLNV LYLTENNPST NVSAQKMQIE IPDLFQHGKV NLLFITDVVE EGFQVPDCSC MVCFDLPKTM CSYSQSQKHA
0501: KQSNSKSIMF LERGNPKQRD HLHDLMRREV LIQDPEAPNL KSCPPPVKNG HGVKEIGSMV IPDSNITVSE EAASTQTMSD PPSRNEQLPP CKKLRLDNNL
0601: LQSNGKEKVA SSKSKSSSSA AGSKKRKELH GTTCANALSG TWGENIDGAT FQAYKFDFCC NISGEVYSSF SLLLESTLAE DVGKVEMDLY LVRKLVKASV
0701: SPCGQIRLSQ EELVKAKYFQ QFFFNGMFGK LFVGSKSQGT KREFLLQTDT SSLWHPAFMF LLLPVETNDL ASSATIDWSA INSCASIVEF LKKNSLLDLR
0801: DSDGNQCNTS SGQEVLLDDK MEETNLIHFA NASSDKNSLE ELVVIAIHTG RIYSIVEAVS DSSAMSPFEV DASSGYATYA EYFNKKYGIV LAHPNQPLMK
0901: LKQSHHAHNL LVDFNEEMVV KTEPKAGNVR KRKPNIHAHL PPELLARIDV PRAVLKSIYL LPSVMHRLES LMLASQLREE IDCSIDNFSI SSTSILEAVT
1001: TLTCPESFSM ERLELLGDSV LKYVASCHLF LKYPDKDEGQ LSRQRQSIIS NSNLHRLTTS RKLQGYIRNG AFEPRRWTAP GQFSLFPVPC KCGIDTREVP
1101: LDPKFFTENM TIKIGKSCDM GHRWVVSKSV SDCAEALIGA YYVSGGLSAS LHMMKWLGID VDFDPNLVVE AINRVSLRCY IPKEDELIEL ERKIQHEFSA
1201: KFLLKEAITH SSLRESYSYE RLEFLGDSVL DFLITRHLFN TYEQTGPGEM TDLRSACVNN ENFAQVAVKN NLHTHLQRCA TVLETQINDY LMSFQKPDET
1301: GRSIPSIQGP KALGDVVESI AGALLIDTRL DLDQVWRVFE PLLSPLVTPD KLQLPPYREL NELCDSLGYF FRVKCSNDGV KAQATIQLQL DDVLLTGDGS
1401: EQTNKLALGK AASHLLTQLE KRNISRKTSL GDNQSSMDVN LACNHSDRET LTSETTEIQS IVIPFIGPIN MKKGGPRGTL HEFCKKHLWP MPTFDTSEEK
1501: SRTPFEFIDG GEKRTSFSSF TSTITLRIPN REAVMYAGEA RPDKKSSFDS AVVELLYELE RRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.