Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g056620.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20320.1 | Solyc01g056620.2.1 | AT3G62800.1 | 24352449 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 49.09 | 60.86 |
| KRH03544 | Soybean | nucleus | 58.79 | 55.2 |
| KRH20103 | Soybean | nucleus | 58.79 | 55.16 |
| CDX92469 | Canola | nucleus, plastid | 52.93 | 49.51 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 52.86 | 49.48 |
| CDY35811 | Canola | nucleus | 52.86 | 49.48 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 42.71 | 48.13 |
| AT5G20320.1 | Thale cress | cytosol | 52.6 | 47.47 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 48.37 | 46.18 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 48.57 | 45.96 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 48.5 | 45.85 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 48.44 | 45.5 |
| Os04t0509300-02 | Rice | cytosol | 48.7 | 45.14 |
| OQU81938 | Sorghum | mitochondrion | 48.11 | 44.38 |
| TraesCS2B01G383300.2 | Wheat | plastid | 48.5 | 43.34 |
| Solyc10g006210.1.1 | Tomato | cytosol | 2.54 | 36.11 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 27.99 | 31.8 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 26.11 | 30.45 |
| Solyc06g048960.2.1 | Tomato | vacuole | 27.67 | 30.38 |
| Solyc11g008520.1.1 | Tomato | nucleus | 27.41 | 29.48 |
| Solyc05g041920.2.1 | Tomato | cytosol | 5.08 | 29.32 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 7.68 | 29.21 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 7.29 | 28.64 |
| Solyc08g067200.1.1 | Tomato | cytosol | 5.4 | 28.52 |
| Solyc08g067210.2.1 | Tomato | nucleus | 25.07 | 26.92 |
| Solyc07g049150.2.1 | Tomato | cytosol | 4.69 | 26.87 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 4.95 | 25.94 |
| Solyc05g024210.1.1 | Tomato | cytosol | 5.53 | 25.3 |
| Solyc10g005130.2.1 | Tomato | nucleus | 28.26 | 22.99 |
Protein Annotations
Description
Dicer-like protein 4 [Source:Projected from Arabidopsis thaliana (AT5G20320) UniProtKB/Swiss-Prot;Acc:P84634]
Coordinates
chr7:-:52983..79984
Molecular Weight (calculated)
173350.0 Da
IEP (calculated)
6.837
GRAVY (calculated)
-0.218
Length
1536 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGHLIKKPQK SICVFLAPTV ALVQQQAKVI EESIDFKVGT YCGKSKHLKS HQDWEKEMEQ YEVLVMTPQI LLHNLSHCYI RIEFIALLIF DECHYAQVES
0101: DHPYAEIMKI FYKPDVVKQP RIFGMTASPI SGKGATVEGL ETLLRSKVYS VEDKDELEQF VASPKVNVYQ YGPGSSCHTK AYSQKLEEIK HQCVKELHKK
0201: AVDSTLRNTK KMLKRLHGHL IFSLENLGVL GALQASCILL KGDHHERHQM VEAEVNASDD SLCDRYLSQV DTVFTSGCAK DGMNPDLALM EVLKEPYFSK
0301: KLLRLIGILS NFGVQPDMKC IVFVNRIVTA RSLSYILQHL KILSSWKCGF LVGVHSGLKS MSRKNTNIIL DKFRSGELNL LIATKVGEEG LDIQTCCLVI
0401: RFDLPETVAS FIQSRGRARM PKSEYAFLVD RGNQRELDLI EHFTRSEAQM DDEISSRKSR TMVADFQENI YKVDMTGATV SSALSISLLH HYCSKLPHDE
0501: YFCPKPQFYY FDDVDGTICK LILPSNAAMH SIDSAPQSSI EAAKKDACLR ACKSLHELGA LTDYLLPDQA DEDKDLVPDF SDLECCEGED AREELHEMIV
0601: PASLKEPWTE TDNPVCLNSY YISFFPFPND RVYKKFGLFL KAPLPQEAER MKLDLNLARG RSVKTELIPS GTTSFENNEI QLAEKFQRMF FKIILDRSEF
0701: ISEFVSLEKK DFVDSGSKFY LLLPVNLFGH DKISVDWELV RRCLSSPVFG TSVCTSNNMS KFEEQLQLAN GSKSVHDVVN SLVYVPCKDA FFFISDVVKD
0801: KNAYSMYKDS KNHVEHYYDT FSVHLLYPDQ PLIKAKQLFC LENLLRKKGY SELRDKEEHF VELPPEICQL KIIGFSKDIG SSLSLLPSIM HRLESLLVAI
0901: ELKGCLSASF PEGRELAIDH VLEALTTENC HESFSLERLE VLGDAFLKFA VGRHLFLLHD AFDEGQLTRK RSNAVNNSNL YMVAIKKNLQ AYIRDQSFEP
1001: DHFYVVGRPC PVTCNKQTEK NIHGLCGSGT DGIKTEVRCS KYHHWLRKKT IADIVEALVG AFVVDSGFKA AIAFLKWIGI HTDFKEPQLK SICSASKVFM
1101: PLADEIDVLG IERLLGYSFI HKGLLIQAFI HPSYNRHGGG CYQRLEFLGD AVLDYLITSY LYSVYPKLKP GQLTDLRSIS VNNNTFAVVA VRQSFHSHIL
1201: CDSSDLRESI TRYVNFIGRP DSTRRLGEEP SCPKALGDLV ESCMGAILLD TGFDLNRAWQ IILSFLKPVM SFTRLQLNPT RELYELCQSF GWNLKFLPSK
1301: KDGNFLVEAR VNGENVSAAA SALNINKKSA QRMAAQIVCS SLKAQGYRPK SKSLEQVLKA AIKMEAKLIG YDETPCVLTT ICDDLDKHET SESDCHLKVF
1401: PVNEELARSC NFKSKSTRKL LSTEASVQCN SDQTIMSNGS KEDAKATGGS KTESAKSRLH EICAANCWKP PLFECCKETG PSHLKEFTFR VLVEIEETSR
1501: VIESYGEAQA KKKDAAEHAA EGALWFLKQE GYLLDN
0101: DHPYAEIMKI FYKPDVVKQP RIFGMTASPI SGKGATVEGL ETLLRSKVYS VEDKDELEQF VASPKVNVYQ YGPGSSCHTK AYSQKLEEIK HQCVKELHKK
0201: AVDSTLRNTK KMLKRLHGHL IFSLENLGVL GALQASCILL KGDHHERHQM VEAEVNASDD SLCDRYLSQV DTVFTSGCAK DGMNPDLALM EVLKEPYFSK
0301: KLLRLIGILS NFGVQPDMKC IVFVNRIVTA RSLSYILQHL KILSSWKCGF LVGVHSGLKS MSRKNTNIIL DKFRSGELNL LIATKVGEEG LDIQTCCLVI
0401: RFDLPETVAS FIQSRGRARM PKSEYAFLVD RGNQRELDLI EHFTRSEAQM DDEISSRKSR TMVADFQENI YKVDMTGATV SSALSISLLH HYCSKLPHDE
0501: YFCPKPQFYY FDDVDGTICK LILPSNAAMH SIDSAPQSSI EAAKKDACLR ACKSLHELGA LTDYLLPDQA DEDKDLVPDF SDLECCEGED AREELHEMIV
0601: PASLKEPWTE TDNPVCLNSY YISFFPFPND RVYKKFGLFL KAPLPQEAER MKLDLNLARG RSVKTELIPS GTTSFENNEI QLAEKFQRMF FKIILDRSEF
0701: ISEFVSLEKK DFVDSGSKFY LLLPVNLFGH DKISVDWELV RRCLSSPVFG TSVCTSNNMS KFEEQLQLAN GSKSVHDVVN SLVYVPCKDA FFFISDVVKD
0801: KNAYSMYKDS KNHVEHYYDT FSVHLLYPDQ PLIKAKQLFC LENLLRKKGY SELRDKEEHF VELPPEICQL KIIGFSKDIG SSLSLLPSIM HRLESLLVAI
0901: ELKGCLSASF PEGRELAIDH VLEALTTENC HESFSLERLE VLGDAFLKFA VGRHLFLLHD AFDEGQLTRK RSNAVNNSNL YMVAIKKNLQ AYIRDQSFEP
1001: DHFYVVGRPC PVTCNKQTEK NIHGLCGSGT DGIKTEVRCS KYHHWLRKKT IADIVEALVG AFVVDSGFKA AIAFLKWIGI HTDFKEPQLK SICSASKVFM
1101: PLADEIDVLG IERLLGYSFI HKGLLIQAFI HPSYNRHGGG CYQRLEFLGD AVLDYLITSY LYSVYPKLKP GQLTDLRSIS VNNNTFAVVA VRQSFHSHIL
1201: CDSSDLRESI TRYVNFIGRP DSTRRLGEEP SCPKALGDLV ESCMGAILLD TGFDLNRAWQ IILSFLKPVM SFTRLQLNPT RELYELCQSF GWNLKFLPSK
1301: KDGNFLVEAR VNGENVSAAA SALNINKKSA QRMAAQIVCS SLKAQGYRPK SKSLEQVLKA AIKMEAKLIG YDETPCVLTT ICDDLDKHET SESDCHLKVF
1401: PVNEELARSC NFKSKSTRKL LSTEASVQCN SDQTIMSNGS KEDAKATGGS KTESAKSRLH EICAANCWKP PLFECCKETG PSHLKEFTFR VLVEIEETSR
1501: VIESYGEAQA KKKDAAEHAA EGALWFLKQE GYLLDN
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.