CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76663
CDY11449

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20320.1	CDX76663	AT3G62800.1	24352449
AT5G20320.1	CDY11449	AT3G62800.1	24352449

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002293.1-P	Field mustard	nucleus, plastid	98.84	98.9
CDY35811	Canola	nucleus	97.81	97.87
AT5G20320.1	Thale cress	cytosol	81.3	78.44
VIT_11s0149g00120.t01	Wine grape	cytosol	43.36	57.47
KRH20103	Soybean	nucleus	55.05	55.22
KRH03544	Soybean	nucleus	54.87	55.07
Solyc07g005030.2.1	Tomato	cytosol	49.51	52.93
Zm00001d025830_P011	Maize	cytosol, nucleus, plasma membrane	46.47	47.42
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	38.67	46.59
Os04t0509300-02	Rice	cytosol	46.41	45.99
TraesCS2A01G364700.2	Wheat	cytosol	45.31	45.84
TraesCS2D01G362700.1	Wheat	nucleus	45.31	45.78
OQU81938	Sorghum	mitochondrion	46.41	45.77
HORVU2Hr1G088270.9	Barley	endoplasmic reticulum	44.34	44.53
TraesCS2B01G383300.2	Wheat	plastid	45.37	43.34
CDY50691	Canola	nucleus	11.81	34.58
CDY50692	Canola	nucleus	27.1	32.04
CDY43132	Canola	cytosol, nucleus, plastid	26.8	31.7
CDX90592	Canola	cytosol, nucleus, peroxisome	4.99	28.87
CDY09765	Canola	cytosol, nucleus, peroxisome	4.99	28.87
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	7.0	28.47
CDY22924	Canola	cytosol	4.87	28.27
CDY48286	Canola	cytosol	4.75	27.56
CDY54644	Canola	cytosol	5.3	25.97
CDY30942	Canola	nucleus	19.85	25.85
CDY29825	Canola	plastid	5.72	25.07
CDY21223	Canola	nucleus	23.26	24.95
CDY15207	Canola	nucleus	26.92	24.43
CDX90002	Canola	nucleus	26.86	24.34

Protein Annotations

Gene3D:1.10.1520.10	MapMan:16.10.1.3	MapMan:16.10.1.4.2	Gene3D:2.170.260.10	Gene3D:3.30.160.20	Gene3D:3.30.160.380
Gene3D:3.40.50.300	GO:A0A078DVK9	EnsemblPlants:CDX92469	ProteinID:CDX92469	ProteinID:CDX92469.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Dicer_dimer_sf	InterPro:Dicer_dimerisation_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016075	GO:GO:0016787	GO:GO:0016891	EnsemblPlantsGene:GSBRNA2T00154241001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR000999	InterPro:IPR001650	InterPro:IPR003100	InterPro:IPR005034	InterPro:IPR014001
InterPro:IPR014720	InterPro:IPR036389	InterPro:IPR038248	HAMAP:MF_00104	InterPro:P-loop_NTPase	InterPro:PAZ_dom
PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF00636	PFAM:PF03368	PFAM:PF14709
ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142	PFscan:PS50821	PFscan:PS51192	PFscan:PS51194
PFscan:PS51327	PANTHER:PTHR14950	PANTHER:PTHR14950:SF15	InterPro:RNase_III	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00535	SMART:SM00949	SUPFAM:SSF52540
SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI0004EF2DDE	InterPro:dsRBD_dom	SEG:seg	:

Description

BnaA10g15080D

Coordinates

chrLK031872:+:814227..823614

Molecular Weight (calculated)

185024.0 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.196

Length

1642 amino acids

Sequence
(BLAST)

0001: MPDREIGDDA SDTNLSSSFS SFASSSSSSF SSSYSAAGAW TDDHSSKMEK DPRKIARRYQ LELCEKAVEE NVIVYLGTGC GKTHIAVMVI YELGPLILSP
0101: RKSVCIFLAP TVALVEQQAL VIAKSINFKV ATHCGGNRTV TTHSDWEREV SENEVLVMTP QILLHNLQHC FIRMEWISLL ILDECHHAQE QSNHPYAQIL
0201: KVFYKTEGVK GPRIFGMTAS PVVGKGSFQS ENLSKSINSL ENLLNAKVYS VESNVQLDGF VSSPIVKVYY YQTAGTEASQ STNIYESMLE DIKQRCLASL
0301: KQQIDNHQTQ VLLNMKKLLK RTHDNLIYSL VNLGLWGAIQ AARIQLNTDR NVHQEPLEEN NKSKICITYL SLAAEVLSSK VAKDENASEL ISLPALKEPF
0401: FSRKLLQLIK ILSAFRIEPH MKCIIFVNRI VTARTLSCIL NSLKLLESWK SDFLVGLSSG VKSMSRKSMK TILERFQSKE LNLLVATKVG EEGLDIQTCC
0501: LVIRFDLPET VTSFIQSRGR ARMPKSEYAF LVDRGSEKEM DLIENFKVNE DRMNLEITSR TSEETCPRLD DEVYRVHETG ACISGGSSIS LLYKYCSRLP
0601: HDEFFQPKPE FQFKPVDEFG GTICRITLPA NAPISEIVSS LLPSIEAAKK NACLKAVYKL HSLGVLNNFL LPDSNEETED ELSDEEFDFD KVEGEACSRG
0701: ELYEMIVPDL FKQKWDPSKS CVNLQSYYIR FVPHPADRIY KKFGLFMKSP LPIEAETMDF DLHLAHQRSV SVKIFPKGDA NFDNDEIRLA ERFQEVALKI
0801: IFERRELITE FVPLGLQDSF RTSKSTFYLL LPINLDDSES VLFVDWATIR SCLSSPIFKA PSALVEDMDP PVGSHLKLAN GCWSIDDVKN SVVFATHKKQ
0901: FYFVTDICHG RNGFSAIRKS ITETHLESIY NSYGVKLKHP LQPLLRLKPL CYVRNLLHNR KRENLEPNEL EEYFIEIPPE LSQLKIKGLS KDIGSSLSLL
1001: PSVMHRMENL LVAIELKHML SASIPEIAEV SGHRVLEALT TEKCQERFSL ERLEVLGDAF LKFAVSRHLF LHHDRLDEGE LTRRRSNAVN NSNLFRLATR
1101: RNLQVYIRDQ AFDPTQFFAL GHPCRVTCDE VAMKEVHSLD KVPGLLESNT GEIRCSKGHH WLHKKTIADV VEALVGAFLV DSGFKGAIEF LKWIGINVDF
1201: ESLQVRDACV ASKRFMPLTT CFDLAALESL LGYTFLHKGL LLQAFIHPSY NRHGGGCYQR LEFLGDAVLD YLMTSYFFSV FPKLKPGQLT DLRSLSVNNK
1301: ALANVAVSFS LQRFLFCDST YLHDAIKDYT NFVTASPLAS GPSEGPKCPK VLGDLIESFL GALFLDCGFD LNHVWRIMLS FLDPVKNLSN LQLSPVKELL
1401: EYCQSYKWDQ EISATKKDGA FSVELKVTKK GSCLTASATG RNKKESTKKA AQLMLTNLKA HGHIKTSNPL EDVLKNSIRN EAKLIGYDEE PIDVVDRDGL
1501: DVENLNIQDS FEEDPVTESK TSETSSLYII RRVLTNAPPS EKEENLPQKT IKEAGGSIIK TAKSLLREIC VANCWKTPEF VCYEEGPAHL KTFSYKVILE
1601: VVDAPNMTLE CYGETKPTKK SASEQAAQAA LWCLEHTGFL RR

Best Arabidopsis Sequence Match ( AT5G20320.1 )
(BLAST)

0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC

Arabidopsis Description

DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.