Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0772000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20320.1 | Os01t0772000-01 | AT3G62800.1 | 24352449 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G362700.1 | Wheat | nucleus | 74.71 | 76.18 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 74.35 | 75.91 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 73.2 | 75.39 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 73.45 | 74.43 |
| OQU81938 | Sorghum | mitochondrion | 73.93 | 73.57 |
| TraesCS2B01G383300.2 | Wheat | plastid | 74.59 | 71.9 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 45.69 | 55.54 |
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 37.05 | 49.56 |
| KRH20103 | Soybean | nucleus | 48.16 | 48.75 |
| Solyc07g005030.2.1 | Tomato | cytosol | 45.14 | 48.7 |
| KRH03544 | Soybean | nucleus | 47.86 | 48.47 |
| CDY35811 | Canola | nucleus | 46.29 | 46.74 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 46.17 | 46.62 |
| CDX92469 | Canola | nucleus, plastid | 45.99 | 46.41 |
| AT5G20320.1 | Thale cress | cytosol | 44.84 | 43.65 |
| Os03t0583900-01 | Rice | nucleus | 26.49 | 31.13 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 7.06 | 28.96 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 5.49 | 28.71 |
| Os01t0909200-01 | Rice | cytosol | 28.42 | 28.53 |
| Os10t0485600-01 | Rice | cytosol, plastid | 27.94 | 28.28 |
| Os06t0358800-01 | Rice | cytosol | 5.07 | 28.09 |
| Os01t0551100-01 | Rice | cytosol | 4.04 | 26.17 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 2.17 | 25.17 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 27.82 | 24.48 |
Protein Annotations
Description
SHOOT ORGANIZATION 1Rnase III family protein, Shoot apical meristem (SAM) formation and maintenance (Os04t0509300-01);Rnase III family protein, Trans-acting siRNA3 (ta-siRNA)(TAS3) biogenesis (Os04t0509300-02)
Coordinates
chr4:-:25474093..25489093
Molecular Weight (calculated)
187000.0 Da
IEP (calculated)
7.456
GRAVY (calculated)
-0.220
Length
1657 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGDAAAAAPA AAAAGPSSTR GEPKDPRTIA RKYQLDLCKR AVEENIIVYL GTGCGKTHIA VLLIYELGHL IRKPSREVCI FLAPTIPLVR QQAVVIASST
0101: DFKVQCYYGN GKNSRDHQEW ENDMREFEVL VMTPQILLQS LRHCFIKMNS IALLILDECH HAQPQKRHPY AQIMKEFYNS NSVEKFPRVF GMTASPIIGK
0201: GVMPSHSFTE KGGRSPCQPL IFFLPKGGSN KLNYTKCINS LEELLHAKVC SVDNEELESV VASPDMEVYF YGPVNHSNLT TICIKELDSL KLQSERMLRA
0301: SLCDFKDSQK KLKSLWRLHE NIIFCLQELG SFGALQAART FLSFDGDKLD RREVDLNGST SSFAHHYLNG ATSILSRNKT DGSHAGSFDL EKLEEPFFSN
0401: KFSVLINVLS RYGLQENMKC IVFVKRITVA RAISNILQNL KCLEFWKCEF LVGCHSGSKN MSRNKMDAIV QRFSSGEVNL LVATSVGEEG LDIQTCCLVV
0501: RFDLPETVAS FIQSRGRARM TKSKYVVLLE RENQSHEKLL NGYIAGESIM NEEIDSRTSN DMFDCLEENI YQVDNTGASI STACSVSLLH CYCDNLPRDM
0601: FFTPSPVFFY IDGIEGIICR LILPPNAAFR QADGQPCLSK DEAKRDACLK ACVKLHKLGA LTDFLLPGPG SRKNKVSVTN NSSNNKVEDD SLREELHEML
0701: IPAVLKPSGL KLDSLSNLHF YYVKFIPIPE DRRYQMFGLF VINPLPVEAE TLQVDLHLAR GRIVKAGIKH LGKIAFEKEK MMLAHKFQEM CLKILLDRSE
0801: FTSPHVKLGN DVTLEINSTF YLLLPIKQKC YGDRFMIDWP AVERCLSSPI FKDPIDVSVH ASYSSNESLR LLDGIFSKTD VVGSVVFSPH NNIFFFVDGI
0901: LDEINAWSEH SGATYAEHFK ERFRIELSHP EQPLLKAKQI FNLRNLLHNR LPETTESEGR ELLEHFVELP PELCSLKVIG FSKDMGSSLS LLPSLMYRLE
1001: NLLVAIELKD VMLSSFPEAS QISASGILEA LTTEKCLERI SLERFEVLGD AFLKYVVGRH KFITYEGLDE GQLTRRRSDV VNNSHLYELS IRKKLQVYIR
1101: DQQFEPTQFF APGRPCKVVC NTDVEVRLHQ MDIHPDNREN CNLRCTRSHH WLHRKVIADV VESLIGAFLV EGGFKAAFAF LHWIGIDVDF NNPALYRVLD
1201: SSSINLSLMD YTDIAGLEEL IGYKFKHKGL LLQAFVHPSF SQHSGGCYQR LEFLGDAVLE YVITSYLYST YPDIKPGQIT DLRSLAVGND SLAYAAVEKS
1301: IHKHLIKDSN HLTSAISKFE MYVKLSNSEK DLLEEPACPK ALGDIVESCI GAVLLDSGFN LNYVWKVMLM LLKPVLTFAN MHTNPMRELR ELCQCHGFEL
1401: GLPKPMKADG EYHVKVEVNI KSKIIICTAA NRNSKAARKF AAQETLSKLK NYGYKHRNKS LEEILIVARK RESELIGYNE DPIDVEADIS VKMKSPHIHE
1501: ENIPFQNTET SFTRSSKFHN QIIAGSGKHD VNNGRNNQPK LATQSGRLPS EATEKSNKKV YHGDMVHKTA RSFLFELCAA NYWKPPEFKL CKEEGPSHLR
1601: KFTYKVVVEI KGASATLLEC HSDGKLQKKA AQEHAAQGAL WCLKQLGHLP KEEDVRV
0101: DFKVQCYYGN GKNSRDHQEW ENDMREFEVL VMTPQILLQS LRHCFIKMNS IALLILDECH HAQPQKRHPY AQIMKEFYNS NSVEKFPRVF GMTASPIIGK
0201: GVMPSHSFTE KGGRSPCQPL IFFLPKGGSN KLNYTKCINS LEELLHAKVC SVDNEELESV VASPDMEVYF YGPVNHSNLT TICIKELDSL KLQSERMLRA
0301: SLCDFKDSQK KLKSLWRLHE NIIFCLQELG SFGALQAART FLSFDGDKLD RREVDLNGST SSFAHHYLNG ATSILSRNKT DGSHAGSFDL EKLEEPFFSN
0401: KFSVLINVLS RYGLQENMKC IVFVKRITVA RAISNILQNL KCLEFWKCEF LVGCHSGSKN MSRNKMDAIV QRFSSGEVNL LVATSVGEEG LDIQTCCLVV
0501: RFDLPETVAS FIQSRGRARM TKSKYVVLLE RENQSHEKLL NGYIAGESIM NEEIDSRTSN DMFDCLEENI YQVDNTGASI STACSVSLLH CYCDNLPRDM
0601: FFTPSPVFFY IDGIEGIICR LILPPNAAFR QADGQPCLSK DEAKRDACLK ACVKLHKLGA LTDFLLPGPG SRKNKVSVTN NSSNNKVEDD SLREELHEML
0701: IPAVLKPSGL KLDSLSNLHF YYVKFIPIPE DRRYQMFGLF VINPLPVEAE TLQVDLHLAR GRIVKAGIKH LGKIAFEKEK MMLAHKFQEM CLKILLDRSE
0801: FTSPHVKLGN DVTLEINSTF YLLLPIKQKC YGDRFMIDWP AVERCLSSPI FKDPIDVSVH ASYSSNESLR LLDGIFSKTD VVGSVVFSPH NNIFFFVDGI
0901: LDEINAWSEH SGATYAEHFK ERFRIELSHP EQPLLKAKQI FNLRNLLHNR LPETTESEGR ELLEHFVELP PELCSLKVIG FSKDMGSSLS LLPSLMYRLE
1001: NLLVAIELKD VMLSSFPEAS QISASGILEA LTTEKCLERI SLERFEVLGD AFLKYVVGRH KFITYEGLDE GQLTRRRSDV VNNSHLYELS IRKKLQVYIR
1101: DQQFEPTQFF APGRPCKVVC NTDVEVRLHQ MDIHPDNREN CNLRCTRSHH WLHRKVIADV VESLIGAFLV EGGFKAAFAF LHWIGIDVDF NNPALYRVLD
1201: SSSINLSLMD YTDIAGLEEL IGYKFKHKGL LLQAFVHPSF SQHSGGCYQR LEFLGDAVLE YVITSYLYST YPDIKPGQIT DLRSLAVGND SLAYAAVEKS
1301: IHKHLIKDSN HLTSAISKFE MYVKLSNSEK DLLEEPACPK ALGDIVESCI GAVLLDSGFN LNYVWKVMLM LLKPVLTFAN MHTNPMRELR ELCQCHGFEL
1401: GLPKPMKADG EYHVKVEVNI KSKIIICTAA NRNSKAARKF AAQETLSKLK NYGYKHRNKS LEEILIVARK RESELIGYNE DPIDVEADIS VKMKSPHIHE
1501: ENIPFQNTET SFTRSSKFHN QIIAGSGKHD VNNGRNNQPK LATQSGRLPS EATEKSNKKV YHGDMVHKTA RSFLFELCAA NYWKPPEFKL CKEEGPSHLR
1601: KFTYKVVVEI KGASATLLEC HSDGKLQKKA AQEHAAQGAL WCLKQLGHLP KEEDVRV
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.