Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13704 | Sorghum | cytosol | 70.57 | 72.51 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 68.9 | 66.67 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 68.23 | 66.02 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 67.89 | 65.06 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 67.56 | 64.54 |
| Zm00001d032362_P002 | Maize | mitochondrion | 69.23 | 62.92 |
| HORVU7Hr1G082860.4 | Barley | plastid | 67.89 | 56.55 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 41.47 | 43.21 |
| Solyc05g041920.2.1 | Tomato | cytosol | 37.46 | 42.11 |
| PGSC0003DMT400086351 | Potato | cytosol | 27.76 | 40.89 |
| CDY22924 | Canola | cytosol | 38.13 | 40.28 |
| Bra039552.1-P | Field mustard | cytosol | 37.79 | 39.93 |
| CDY48286 | Canola | cytosol | 37.79 | 39.93 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 37.79 | 39.79 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 37.79 | 39.79 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 37.79 | 39.79 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 38.13 | 39.18 |
| PGSC0003DMT400001808 | Potato | cytosol | 31.77 | 37.85 |
| AT4G15417.2 | Thale cress | mitochondrion | 36.45 | 37.72 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 36.45 | 37.2 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 35.79 | 36.52 |
| Solyc07g049150.2.1 | Tomato | cytosol | 31.1 | 34.7 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 34.78 | 32.81 |
| Solyc05g024210.1.1 | Tomato | cytosol | 34.78 | 30.95 |
| Os01t0551100-01 | Rice | cytosol | 22.74 | 26.56 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 12.37 | 25.87 |
| Os03t0583900-01 | Rice | nucleus | 27.76 | 5.89 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 36.45 | 5.79 |
| Os01t0909200-01 | Rice | cytosol | 31.1 | 5.63 |
| Os10t0485600-01 | Rice | cytosol, plastid | 30.43 | 5.56 |
| Os04t0509300-02 | Rice | cytosol | 28.09 | 5.07 |
| GSMUA_Achr10P... | Banana | extracellular | 2.01 | 3.21 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 1.67 | 1.31 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:3.30.160.20 | MapMan:35.1 | EntrezGene:4340996 | EMBL:AK107404 | ProteinID:BAD36550.1 |
| ProteinID:BAF19515.1 | ProteinID:BAS97697.1 | ncoils:Coil | ProteinID:EAZ36961.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0004525 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 |
| GO:GO:0030422 | GO:GO:0040029 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090501 | GO:GO:0090502 |
| InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 | EnsemblPlantsGene:Os06g0358800 | EnsemblPlants:Os06t0358800-01 | PFAM:PF00035 |
| PFAM:PF00636 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 |
| UniProt:Q69KJ0 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | UniParc:UPI0000403AD1 | RefSeq:XP_015641965.1 | InterPro:dsRBD_dom | : | : |
Description
Ribonuclease III domain containing protein. (Os06t0358800-01)
Coordinates
chr6:+:14770312..14773944
Molecular Weight (calculated)
33337.8 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.277
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPPHATAS ADEMPSIWKE QHAQDAPPGF VPPMGPGEVA AVESLLGYEF RDKALVEEAL THGSFYYPYR PGVTYERLEY LGDAVLTCVV SREVFLTYGQ
101: LQPGPLTRLR AANVDKEKLA RVAVVHGLHH FLRHKAPNLD GQITDFIEEL SMYPIHSNGL LDPPKVLCDV VESLIGAIYC DSNFNQEIVW QVFQKLADPL
201: ISLETLGKHP VSELFEFCQK TRRGVKIVKD EWDKNLTVEV LIDGEMVGRA TYAQKKEIAQ NRAAKAALDK LKETLGQSQT EPMSAEVSEQ FNKIDLTGS
101: LQPGPLTRLR AANVDKEKLA RVAVVHGLHH FLRHKAPNLD GQITDFIEEL SMYPIHSNGL LDPPKVLCDV VESLIGAIYC DSNFNQEIVW QVFQKLADPL
201: ISLETLGKHP VSELFEFCQK TRRGVKIVKD EWDKNLTVEV LIDGEMVGRA TYAQKKEIAQ NRAAKAALDK LKETLGQSQT EPMSAEVSEQ FNKIDLTGS
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.