Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g049150.2.1 | Tomato | cytosol | 88.45 | 82.84 |
| PGSC0003DMT400086351 | Potato | cytosol | 43.82 | 54.19 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 54.18 | 46.74 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 45.02 | 38.57 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 42.23 | 36.93 |
| Bra039552.1-P | Field mustard | cytosol | 39.04 | 34.63 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 39.04 | 34.51 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 39.04 | 34.51 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 39.04 | 34.51 |
| CDY22924 | Canola | cytosol | 38.25 | 33.92 |
| CDY48286 | Canola | cytosol | 37.85 | 33.57 |
| EES13704 | Sorghum | cytosol | 37.05 | 31.96 |
| Os06t0358800-01 | Rice | cytosol | 37.85 | 31.77 |
| AT4G15417.2 | Thale cress | mitochondrion | 36.26 | 31.49 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 37.05 | 30.1 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 37.05 | 29.81 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 36.65 | 29.77 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 36.26 | 29.07 |
| PGSC0003DMT400037378 | Potato | cytosol | 32.67 | 27.7 |
| Zm00001d032362_P002 | Maize | mitochondrion | 35.46 | 27.05 |
| HORVU7Hr1G082860.4 | Barley | plastid | 37.05 | 25.91 |
| PGSC0003DMT400033487 | Potato | cytosol | 37.05 | 25.34 |
| TraesCS2D01G479300.1 | Wheat | plastid | 31.87 | 23.12 |
| PGSC0003DMT400042918 | Potato | nucleus | 27.89 | 6.34 |
| PGSC0003DMT400029301 | Potato | nucleus | 30.28 | 3.97 |
| GSMUA_Achr10P... | Banana | extracellular | 1.59 | 2.14 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 1.99 | 1.31 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 0.4 | 0.25 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:102599637 | Gene3D:3.30.160.20 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004525 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090501 | GO:GO:0090502 | InterPro:IPR000999 | InterPro:IPR014720 |
| InterPro:IPR036389 | UniProt:M0ZJ46 | PFAM:PF00035 | PFAM:PF00636 | EnsemblPlantsGene:PGSC0003DMG400000676 | PGSC:PGSC0003DMG400000676 |
| EnsemblPlants:PGSC0003DMT400001808 | ScanProsite:PS00517 | PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00535 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000296060B | RefSeq:XP_006357941.1 |
| InterPro:dsRBD_dom | : | : | : | : | : |
Description
Ribonuclease 3 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000676]
Coordinates
chr7:-:44869674..44872595
Molecular Weight (calculated)
28942.5 Da
IEP (calculated)
5.386
GRAVY (calculated)
-0.461
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEQSFQQRE RLVEEITGYK FKNPDLLHQA FTHPSVPQNW ASNDRMEYLG DSVLSLMIAK EHYFAYPDLS SKDLTDLRSV NVDTEKLARV GIKYNLHNHL
101: RCQIQSFNEQ VEEFRSATLE YPLHSLGCIN PPKVLADIVE ALIAAIYIDC NFSIDITWQA VKDMLQPLIT PETLEIQPVT KIMQLCQKNK LEINIVDNWD
201: KTREFECFVD GKSVAKGKSS QTKDTARNRA AYNAYEQVIE NLPMKTTVKD H
101: RCQIQSFNEQ VEEFRSATLE YPLHSLGCIN PPKVLADIVE ALIAAIYIDC NFSIDITWQA VKDMLQPLIT PETLEIQPVT KIMQLCQKNK LEINIVDNWD
201: KTREFECFVD GKSVAKGKSS QTKDTARNRA AYNAYEQVIE NLPMKTTVKD H
001: MGSQLSNAID GKDNTKTIGS ADPDQLMEIE SLEKILNYKF KDKSLLLKAF TDASYVDDKS ESYELLELLG DSILNMGIIY DFIKLYPKEA PGPLTKLRAV
101: NVDTEKLARV AVNHQLYSYL RHKKPLLEEQ ILEFVEAMEK YPLHSNGLLK VPKVLADIVE STIGAIFMDC NSTETVWKVI KPLLEPIIHL DKMKSHPMTE
201: LNEMCQKRNL KLTSKDTWEE NQTYCFHIED KFVGCGHHPV KKETARNFAA KNAIDNFAKF FGDL
101: NVDTEKLARV AVNHQLYSYL RHKKPLLEEQ ILEFVEAMEK YPLHSNGLLK VPKVLADIVE STIGAIFMDC NSTETVWKVI KPLLEPIIHL DKMKSHPMTE
201: LNEMCQKRNL KLTSKDTWEE NQTYCFHIED KFVGCGHHPV KKETARNFAA KNAIDNFAKF FGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.