Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032362_P002 | Maize | mitochondrion | 86.94 | 76.9 |
| Os06t0358800-01 | Rice | cytosol | 72.51 | 70.57 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 70.79 | 66.67 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 70.45 | 66.34 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 70.1 | 65.18 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 69.76 | 65.06 |
| HORVU7Hr1G082860.4 | Barley | plastid | 69.42 | 56.27 |
| PGSC0003DMT400086351 | Potato | cytosol | 29.21 | 41.87 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 41.24 | 41.81 |
| Solyc05g041920.2.1 | Tomato | cytosol | 37.8 | 41.35 |
| Bra039552.1-P | Field mustard | cytosol | 40.21 | 41.34 |
| CDY22924 | Canola | cytosol | 40.21 | 41.34 |
| CDY48286 | Canola | cytosol | 39.52 | 40.64 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 39.18 | 40.14 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 39.18 | 40.14 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 39.18 | 40.14 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 38.14 | 38.14 |
| PGSC0003DMT400001808 | Potato | cytosol | 31.96 | 37.05 |
| AT4G15417.2 | Thale cress | mitochondrion | 36.77 | 37.02 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 35.4 | 35.15 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 35.05 | 34.81 |
| Solyc07g049150.2.1 | Tomato | cytosol | 31.27 | 33.96 |
| Solyc05g024210.1.1 | Tomato | cytosol | 36.43 | 31.55 |
| KXG21693 | Sorghum | plastid | 34.36 | 22.62 |
| KXG38096 | Sorghum | plastid | 28.87 | 10.8 |
| OQU91441 | Sorghum | nucleus | 28.52 | 5.99 |
| KXG33962 | Sorghum | nucleus | 33.33 | 5.85 |
| OQU91611 | Sorghum | nucleus, plastid | 30.58 | 5.44 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 35.74 | 5.39 |
| OQU81938 | Sorghum | mitochondrion | 27.84 | 4.86 |
| GSMUA_Achr10P... | Banana | extracellular | 2.06 | 3.21 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 1.37 | 1.05 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:3.30.160.20 | MapMan:35.1 | EntrezGene:8071008 | UniProt:C5YK89 | ncoils:Coil |
| EnsemblPlants:EES13704 | ProteinID:EES13704 | ProteinID:EES13704.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0030422 | GO:GO:0040029 |
| GO:GO:0090501 | GO:GO:0090502 | InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 | PFAM:PF00035 |
| PFAM:PF00636 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 | EnsemblPlantsGene:SORBI_3007G106900 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | unigene:Sbi.9353 | UniParc:UPI0001A87D97 | RefSeq:XP_002444209.1 | InterPro:dsRBD_dom | : |
Description
hypothetical protein
Coordinates
chr7:+:38604906..38607848
Molecular Weight (calculated)
32764.2 Da
IEP (calculated)
5.895
GRAVY (calculated)
-0.337
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPHVPRESR HRHAPPGEVP PMSAEDVAAI EAVLGYEFAD KSLVELALTH GSFYFPYRPG DTYERLEYLG DGVLTCLMSR EVFRNYRTLP PGPLTRLRAA
101: NVDTEKLARV AVDRGLHRFL RHKAPKLQDQ ICLFIEEMRK YPVHSNGLLD PPKVLCDIVE SLIGAIYWDS DFNQEEVWRV FRTLADPLIG LETLGKHPVT
201: ELFEFCQKTR RGVKFVKDEW DKSLKVEVLI DGELVASATY GPKKEIAQNR AAKAALDKLK ETLGQTQSES ASADVSDALD ELEIAGTLKC Q
101: NVDTEKLARV AVDRGLHRFL RHKAPKLQDQ ICLFIEEMRK YPVHSNGLLD PPKVLCDIVE SLIGAIYWDS DFNQEEVWRV FRTLADPLIG LETLGKHPVT
201: ELFEFCQKTR RGVKFVKDEW DKSLKVEVLI DGELVASATY GPKKEIAQNR AAKAALDKLK ETLGQTQSES ASADVSDALD ELEIAGTLKC Q
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.