CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22802
OQU82704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03300.1	KXG22802	AT1G09700.1	15821876
AT3G03300.1	OQU82704	AT1G09700.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013797_P006	Maize	nucleus	80.85	85.58
Os09t0315050-00	Rice	cytosol, extracellular, nucleus	9.25	50.35
KRG97157	Soybean	cytosol, nucleus, plasma membrane	33.68	33.25
TraesCS5B01G079900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	57.07	32.86
TraesCS5A01G073600.1	Wheat	cytosol, nucleus, plastid	57.45	31.95
TraesCS5D01G086900.1	Wheat	cytosol	56.81	31.55
Os03t0583900-01	Rice	nucleus	56.43	31.13
OQU91441	Sorghum	nucleus	54.76	30.74
HORVU5Hr1G019300.8	Barley	plastid	56.94	30.03
EES13704	Sorghum	cytosol	10.8	28.87
PGSC0003DMT400042918	Potato	nucleus	37.02	26.09
Bra031999.1-P	Field mustard	nucleus	34.7	21.14
Solyc11g008540.1.1	Tomato	mitochondrion	36.63	21.08
VIT_04s0023g00920.t01	Wine grape	cytosol, nucleus, plastid	37.53	20.93
Solyc06g048960.2.1	Tomato	vacuole	36.89	20.51
Solyc11g008530.1.1	Tomato	mitochondrion	34.58	20.43
Solyc11g008520.1.1	Tomato	nucleus	36.12	19.68
CDY50692	Canola	nucleus	35.09	19.65
CDY43132	Canola	cytosol, nucleus, plastid	34.7	19.45
AT3G03300.1	Thale cress	nucleus	34.58	19.38
KRH36816	Soybean	cytosol	35.22	19.28
KRH36818	Soybean	cytosol, nucleus, plastid	34.58	19.02
KRH11802	Soybean	cytosol	6.56	17.89
KXG21693	Sorghum	plastid	9.77	17.19
OQU81938	Sorghum	mitochondrion	28.41	13.27
KXG33962	Sorghum	nucleus	26.86	12.61
OQU91611	Sorghum	nucleus, plastid	26.09	12.4
KXG40313	Sorghum	cytosol, nucleus, plastid	26.35	10.63

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A1B6QJK2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501
GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	EnsemblPlants:KXG38096	ProteinID:KXG38096
ProteinID:KXG38096.1	PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF19	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535
EnsemblPlantsGene:SORBI_3001G179900	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI00081AB640	InterPro:dsRBD_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:15246260..15252860

Molecular Weight (calculated)

86438.6 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.172

Length

778 amino acids

Sequence
(BLAST)

001: MLSSSSLPIA PPKPHQRPVP TTMDGSASPS AAAVETDTQG GEAPSKAKRG NAEEKYQHGQ PVYFPEELVD NWVSFSRHGL YYCYSINISL QGSCNTAADP
101: TNIILAVKCD MGPDFFWHSF NSGGIGITIK YLCKIHLNQE QVIFARRFQT TVLSLLINSD HLEVSDAIKY FHELQVDVGV VYLLLPTVYG KIDWCGIKFS
201: TSSVYDDVTD KNTRHSHSCK DADILQTMDG PCCRCILQNS VVYAPCDKKI YNITELDLNA NQPLDLNNRS AVSCKSKPLL VASGLFTVQN FLYKCYEKRK
301: EPRSVKLLPP GLCRVVMAPV SANTLFSFSF VPSIMYRIQC LLLSAKLKVQ LGPRMQQFNI TAMKILEALT TKECQEKFSL ESLETLGDSF LKYVTGQDLF
401: SKYTYREDML TSMRGEKVSN PALCQLACKS EIVGYIRGEL FSPKKWTIPG LGYDTRGNNK VLFRTTNDMY SLDEIPIKSK RIADTVEALT GAYLSACGEL
501: AAVHFIKSLG MDVELHSKMQ VERIVSTKSE EFIDVESLQT IIGYVFDDSS LLIEALTHSS YNTAGITTCN ERLEFLGDAV LDYILTDYFY RKYYPKCTPA
601: LLTNLRKASV NNWCYAHAAV KAGLHKHILH SSSKQMIKDL ESSGPFSGPS HGWEPGIGLP EDLADLFEAI AGAIYVDSGN DKEAVWRAMR RLLVPLATPE
701: TILLDPVSEL KELCEHKNYP EPWYSPTRDD AAGVTRVVAK VKAAGREYSD TGEGPNQDVA EVFAAKALLK KLKAAARG

Best Arabidopsis Sequence Match ( AT1G01040.2 )
(BLAST)

0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS

Arabidopsis Description

DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.