Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra019999.1-P | |
| Bra025523.1-P | |
| Bra030793.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Bra019999.1-P | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Bra030793.1-P | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Bra025523.1-P | AT5G41070.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43132 | Canola | cytosol, nucleus, plastid | 99.84 | 91.86 |
| AT3G03300.1 | Thale cress | nucleus | 81.75 | 75.22 |
| KRH11802 | Soybean | cytosol | 13.94 | 62.46 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 56.3 | 51.54 |
| PGSC0003DMT400042918 | Potato | nucleus | 42.83 | 49.55 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 54.82 | 49.51 |
| KRH36816 | Soybean | cytosol | 55.05 | 49.47 |
| Solyc06g048960.2.1 | Tomato | vacuole | 53.8 | 49.11 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 51.76 | 48.89 |
| Solyc11g008520.1.1 | Tomato | nucleus | 53.33 | 47.69 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 47.3 | 45.86 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 25.69 | 41.62 |
| Os03t0583900-01 | Rice | nucleus | 45.03 | 40.78 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.68 | 40.34 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 44.09 | 40.24 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 43.93 | 40.04 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 4.46 | 39.86 |
| OQU91441 | Sorghum | nucleus | 42.99 | 39.61 |
| HORVU5Hr1G019300.8 | Barley | plastid | 44.17 | 38.24 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.38 | 37.82 |
| Zm00001d013797_P006 | Maize | nucleus | 20.99 | 36.46 |
| KXG38096 | Sorghum | plastid | 21.14 | 34.7 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 7.05 | 31.69 |
| Bra039552.1-P | Field mustard | cytosol | 6.66 | 30.04 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 32.26 | 25.11 |
| Bra019456.1-P | Field mustard | nucleus | 26.23 | 23.15 |
| Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 32.5 | 22.48 |
| Bra035784.1-P | Field mustard | cytosol | 5.64 | 21.49 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| EnsemblPlantsGene:Bra031999 | EnsemblPlants:Bra031999.1 | EnsemblPlants:Bra031999.1-P | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf |
| InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006396 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0016787 | GO:GO:0016891 |
| GO:GO:0031047 | GO:GO:0040029 | GO:GO:0051214 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 |
| InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | UniProt:M4ET69 | InterPro:P-loop_NTPase | InterPro:PAZ_dom |
| InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 |
| ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | UniParc:UPI000254616E | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
AT3G03300 (E=0.0) DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III
Coordinates
chrA02:-:26713551..26719906
Molecular Weight (calculated)
144252.0 Da
IEP (calculated)
7.225
GRAVY (calculated)
-0.106
Length
1277 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTIVDMESES ADQVSPLPFA RSYQVEALEK AMKRNTIVYL ETGSGKTLIA IMLLRSYAYL FRKPSPCFSV FLVPQVVLVT QQAEALKRHT DLKVGMYWGS
0101: MGVDFWDAPT WKQEVDKYEV LVMTPAILLS ALRHSFLSLN MIKVLIFDEC HHARGNHAYA CILKVYTCAN ESVLAQFVPF STPSFKYYTY VEIPSSARAG
0201: IIAELEKLAK EHLLALATLD LKSSTVNSIK KRLSKICSSI TYCLDELGIL MALKAAQSFS VSQNDFVFSL EKIRCIIFVE RVIAAMVLES FLNEILPTYN
0301: SWKTKYVAGN NSGLQSQTRK KQNETVEDFR KGLVNIIVST SILEEGLDVQ SCNLVVGFDP ASNICSFIQS QGRARMPNSD YLMMVERGDM DTQSRLKKYI
0401: SGAKRMREDS LSHSLVPCKP LPDDSSGEVY RVNSTGAIVT LSSSVSLIYF YCSRLPSDEY FKPTPRFDID KDQGICTLYL PKSCQVKEVS AQGNGNLLKQ
0501: TACLKACIQL HQAGALTDHL VPDMVLKETV QLKLGKIHYD TEQPSYFPPE LVSQFSALSQ TTYHFYSIRM KSEFPGNLHF KDVLLGTRVK LEDDIGNTCF
0601: RLEDHLGTIA VTLSYVGGFD LTQDEVLLCR RFQITLFRVL LDHSVENLLA ALDGLHLRDG PALDYLLVPS THEQKASLID WEVIRSVNFT SHKPWERHVD
0701: CSAKDASCIL HTKDGLFCTC VLQNALVYTP HNGYVYCTRG ILSNLNANSV LTMRNSGDVT YMEYYEKRHE VQLNFVDEPL LNGRHIFTLH NNLHMTRKKE
0801: KEHDREYVEL PPELCHVILA PISVDMIYSY KFMPSVMQRV ESLLIALNLK KNIPKVNIPT IKVLEAITTK KCQDQFHLES LETLGDSFLK YAVCQHLFQE
0901: YHTHHEGLLS SIKDGMISNV TLCKFGCDKK LQGFIRNECF EPKGWMVPGQ SSAAYALVND YLSESRNMYI ARRMNLKRKS VADVVEALIG AYLSEGGELA
1001: ALTFMNWVGI KVDFTTTMIQ REPSIQAEKL VNVRYMESLL NYKFKDKSLL VEALTHGSYM IPEIPRCYQR LEFLGDSVLD YLITKHLYGE YPNLSPGLLT
1101: DMRSASVNNE CYAQVAVKSN LHKHVLHASH DLHKHISRTV SEFERLSSVQ SSFGWESEIA FPKVLGDVIE SLAGAIHVDS GYNKEVVFAS IKPLLGCMIT
1201: PETVKLHPVR ELTELCQKAQ FELSKAKGFE NGEAFFTVEV EAKEMSFAHT ARASDKKMAK KLAYKEVLNS LKKSLDS
0101: MGVDFWDAPT WKQEVDKYEV LVMTPAILLS ALRHSFLSLN MIKVLIFDEC HHARGNHAYA CILKVYTCAN ESVLAQFVPF STPSFKYYTY VEIPSSARAG
0201: IIAELEKLAK EHLLALATLD LKSSTVNSIK KRLSKICSSI TYCLDELGIL MALKAAQSFS VSQNDFVFSL EKIRCIIFVE RVIAAMVLES FLNEILPTYN
0301: SWKTKYVAGN NSGLQSQTRK KQNETVEDFR KGLVNIIVST SILEEGLDVQ SCNLVVGFDP ASNICSFIQS QGRARMPNSD YLMMVERGDM DTQSRLKKYI
0401: SGAKRMREDS LSHSLVPCKP LPDDSSGEVY RVNSTGAIVT LSSSVSLIYF YCSRLPSDEY FKPTPRFDID KDQGICTLYL PKSCQVKEVS AQGNGNLLKQ
0501: TACLKACIQL HQAGALTDHL VPDMVLKETV QLKLGKIHYD TEQPSYFPPE LVSQFSALSQ TTYHFYSIRM KSEFPGNLHF KDVLLGTRVK LEDDIGNTCF
0601: RLEDHLGTIA VTLSYVGGFD LTQDEVLLCR RFQITLFRVL LDHSVENLLA ALDGLHLRDG PALDYLLVPS THEQKASLID WEVIRSVNFT SHKPWERHVD
0701: CSAKDASCIL HTKDGLFCTC VLQNALVYTP HNGYVYCTRG ILSNLNANSV LTMRNSGDVT YMEYYEKRHE VQLNFVDEPL LNGRHIFTLH NNLHMTRKKE
0801: KEHDREYVEL PPELCHVILA PISVDMIYSY KFMPSVMQRV ESLLIALNLK KNIPKVNIPT IKVLEAITTK KCQDQFHLES LETLGDSFLK YAVCQHLFQE
0901: YHTHHEGLLS SIKDGMISNV TLCKFGCDKK LQGFIRNECF EPKGWMVPGQ SSAAYALVND YLSESRNMYI ARRMNLKRKS VADVVEALIG AYLSEGGELA
1001: ALTFMNWVGI KVDFTTTMIQ REPSIQAEKL VNVRYMESLL NYKFKDKSLL VEALTHGSYM IPEIPRCYQR LEFLGDSVLD YLITKHLYGE YPNLSPGLLT
1101: DMRSASVNNE CYAQVAVKSN LHKHVLHASH DLHKHISRTV SEFERLSSVQ SSFGWESEIA FPKVLGDVIE SLAGAIHVDS GYNKEVVFAS IKPLLGCMIT
1201: PETVKLHPVR ELTELCQKAQ FELSKAKGFE NGEAFFTVEV EAKEMSFAHT ARASDKKMAK KLAYKEVLNS LKKSLDS
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.