Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90002 | Canola | nucleus | 97.07 | 98.9 |
| CDY15207 | Canola | nucleus | 95.45 | 97.4 |
| AT1G01040.2 | Thale cress | nucleus | 92.42 | 89.32 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 77.09 | 73.16 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 77.14 | 73.14 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 75.51 | 71.56 |
| PGSC0003DMT400029301 | Potato | nucleus | 73.46 | 70.85 |
| Solyc10g005130.2.1 | Tomato | nucleus | 72.32 | 70.71 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 72.32 | 69.21 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 71.94 | 68.77 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 69.5 | 68.14 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 67.06 | 68.1 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 70.64 | 66.13 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 70.91 | 66.08 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 70.69 | 65.35 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 70.64 | 64.43 |
| Bra039552.1-P | Field mustard | cytosol | 5.63 | 36.75 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 5.63 | 36.62 |
| Bra031999.1-P | Field mustard | nucleus | 22.48 | 32.5 |
| Bra035784.1-P | Field mustard | cytosol | 5.8 | 31.94 |
| Bra019456.1-P | Field mustard | nucleus | 22.16 | 28.27 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 24.32 | 27.36 |
Protein Annotations
Description
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III
Coordinates
chrA10:+:4445070..4452145
Molecular Weight (calculated)
206454.0 Da
IEP (calculated)
6.313
GRAVY (calculated)
-0.450
Length
1846 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVMEDERSNK DVNNKPSYWL DACEDISCDL IDDLVSDFDP SSVAVAESIV NNDFFGGIDH ILDTIKNGGG LPNNEAPQLN PGDVVTKENG LQKSGVKRED
0101: ASKEEGDKNR KRARVCSYQS EKNRKRTRGY EEAGAHNKRR DGYNYRRDGR DNREGRGYWE RDKVGSNELV YRSGTWEADH ERDVKKESRR SHREEAEEDN
0201: KKSKPEEQRK EKVVEEQARR YQLDVLEQAK AKNTIAFLET GAGKTLIAIL LIKSVHKDLM SQNRKMLSVF LVPKVPLVYQ QAEVIRNQTC FQVGHYCGEM
0301: GQDFWDARRW QREFESKQVL VMTAQILLNI LRHSIIRMES INLLILDECH HAVKKHPYSL VMSEFYHTTS KDKRPAIFGM TASPVNLKGV SSQVDCAIKI
0401: RNLETKLDST VCTIKDRKEL EKHVPMPSEI VVEYDKAATM WSFHEKIKQM IAAVEEAAKA SSRKSKWQFM GARDAGAKEE LKQVYGVSER TESDGAANLI
0501: HKLRAINYTL AELGQWCAYK VAQSFLTALQ SDERVNFQVD VKFQESYLSE VVSLLQCELV EGAAAEKAAT ECSKPENGNA NDEIEEGELP DDHVVSGGEH
0601: VDEVIGAAVA DGKVTPKVQS LIKLLLKYQH TSDFRAIVFV ERVVAALVLP KVFAELPSLG FIRCASMIGH NNSQEMKSSQ MQDTISKFRD GQVTLLVATS
0701: VAEEGLDIRQ CNVVMRFDLA KTVLAYIQSR GRARKPGSDY ILMVERENVS HAAFLRNARN SEETLRKEAI ERTDLSHLKD TSRLISIDAV PGTVYKVETT
0801: GAMVSLNSAV GLIHFYCSQL PGDRYAILRP EFSMEKHEKP GGHTEYSCRL QLPCNAPFEI LEGPLCSSMR LAQQAVCLAG CKKLHEMGAF TDMLLPDKGS
0901: GQDAEKADQD EEGEPVPGTA RHREFYPEGV ADVLKGDWIL SGKEDCESSK LFHLYMYSVR CEDSGSSKDP FLTEVSEFAV LFGNELDAEV LSMSMDLYVA
1001: RAMITKASLV FKGSLDITES QLSSIKKFHV RLMSIVLDVD VEPSTTPWDP AKAYLFVPVT DNTKGINWEL IEKITETTVW DNPLQRARPD VYLGTNERTL
1101: GGDRREYGFG KLRNNIGLGQ QKSHPTYGIR GAVASFDVVR ASGLLPVREE VRSDVSQGKL MMADGCMVAD NLIGKIVTAA HSGKRFYVDS ICYDMSAETS
1201: FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET ILDKTYYVFL PPELCVVHPL SGSLVRGAQR LPSIMRRVES
1301: MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWIV SRFLFLKYPQ KHEGQLTRMR QQMADRFAPS RWSAPGVPPV YDEDTKDGGG
1401: GSSFFDEEQK QASSEDVFED GEMEDGELEG DLSSYRVLSS KTLADVVEAL IGVYYVEGGK AAANHLMKWI GIHVEDDPEE TEGTVKPVSV PESVLKSIDF
1501: VGLERALKYE FTEKGLLVEA ITHASRPSSG VSCYQRLEFV GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK
1601: QIREFVKEVL TESSKPGFNS FGLGDCKAPK VLGDIVESIA GAIFLDSGRD TSAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT
1701: ATVEVFIDGV QVGVAQNPQK KRAQKLAARN ALAALKEKER AESKEKAANG NAGDESENGN KKNGNQTFTR QTLNDICLRK NWPMPSYRCV KEGGPAHAKR
1801: FTFGVRVNTS DRGWTDECIG EPMPSVKKAK DSAASLLLEL LNKTYS
0101: ASKEEGDKNR KRARVCSYQS EKNRKRTRGY EEAGAHNKRR DGYNYRRDGR DNREGRGYWE RDKVGSNELV YRSGTWEADH ERDVKKESRR SHREEAEEDN
0201: KKSKPEEQRK EKVVEEQARR YQLDVLEQAK AKNTIAFLET GAGKTLIAIL LIKSVHKDLM SQNRKMLSVF LVPKVPLVYQ QAEVIRNQTC FQVGHYCGEM
0301: GQDFWDARRW QREFESKQVL VMTAQILLNI LRHSIIRMES INLLILDECH HAVKKHPYSL VMSEFYHTTS KDKRPAIFGM TASPVNLKGV SSQVDCAIKI
0401: RNLETKLDST VCTIKDRKEL EKHVPMPSEI VVEYDKAATM WSFHEKIKQM IAAVEEAAKA SSRKSKWQFM GARDAGAKEE LKQVYGVSER TESDGAANLI
0501: HKLRAINYTL AELGQWCAYK VAQSFLTALQ SDERVNFQVD VKFQESYLSE VVSLLQCELV EGAAAEKAAT ECSKPENGNA NDEIEEGELP DDHVVSGGEH
0601: VDEVIGAAVA DGKVTPKVQS LIKLLLKYQH TSDFRAIVFV ERVVAALVLP KVFAELPSLG FIRCASMIGH NNSQEMKSSQ MQDTISKFRD GQVTLLVATS
0701: VAEEGLDIRQ CNVVMRFDLA KTVLAYIQSR GRARKPGSDY ILMVERENVS HAAFLRNARN SEETLRKEAI ERTDLSHLKD TSRLISIDAV PGTVYKVETT
0801: GAMVSLNSAV GLIHFYCSQL PGDRYAILRP EFSMEKHEKP GGHTEYSCRL QLPCNAPFEI LEGPLCSSMR LAQQAVCLAG CKKLHEMGAF TDMLLPDKGS
0901: GQDAEKADQD EEGEPVPGTA RHREFYPEGV ADVLKGDWIL SGKEDCESSK LFHLYMYSVR CEDSGSSKDP FLTEVSEFAV LFGNELDAEV LSMSMDLYVA
1001: RAMITKASLV FKGSLDITES QLSSIKKFHV RLMSIVLDVD VEPSTTPWDP AKAYLFVPVT DNTKGINWEL IEKITETTVW DNPLQRARPD VYLGTNERTL
1101: GGDRREYGFG KLRNNIGLGQ QKSHPTYGIR GAVASFDVVR ASGLLPVREE VRSDVSQGKL MMADGCMVAD NLIGKIVTAA HSGKRFYVDS ICYDMSAETS
1201: FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET ILDKTYYVFL PPELCVVHPL SGSLVRGAQR LPSIMRRVES
1301: MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWIV SRFLFLKYPQ KHEGQLTRMR QQMADRFAPS RWSAPGVPPV YDEDTKDGGG
1401: GSSFFDEEQK QASSEDVFED GEMEDGELEG DLSSYRVLSS KTLADVVEAL IGVYYVEGGK AAANHLMKWI GIHVEDDPEE TEGTVKPVSV PESVLKSIDF
1501: VGLERALKYE FTEKGLLVEA ITHASRPSSG VSCYQRLEFV GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK
1601: QIREFVKEVL TESSKPGFNS FGLGDCKAPK VLGDIVESIA GAIFLDSGRD TSAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT
1701: ATVEVFIDGV QVGVAQNPQK KRAQKLAARN ALAALKEKER AESKEKAANG NAGDESENGN KKNGNQTFTR QTLNDICLRK NWPMPSYRCV KEGGPAHAKR
1801: FTFGVRVNTS DRGWTDECIG EPMPSVKKAK DSAASLLLEL LNKTYS
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.