Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005130.2.1 | Tomato | nucleus | 96.81 | 98.15 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 75.6 | 74.28 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 75.13 | 73.93 |
| Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 70.85 | 73.46 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 74.71 | 73.45 |
| CDX90002 | Canola | nucleus | 69.17 | 73.07 |
| CDY15207 | Canola | nucleus | 68.86 | 72.86 |
| AT1G01040.2 | Thale cress | nucleus | 71.79 | 71.94 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 66.35 | 69.86 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 70.38 | 69.83 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 70.38 | 69.76 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 67.97 | 69.09 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 69.28 | 67.24 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 69.33 | 66.99 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 69.54 | 66.65 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 69.23 | 65.46 |
| PGSC0003DMT400086351 | Potato | cytosol | 3.66 | 34.48 |
| PGSC0003DMT400033487 | Potato | cytosol | 6.53 | 34.06 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 5.02 | 32.76 |
| PGSC0003DMT400037378 | Potato | cytosol | 4.96 | 32.09 |
| PGSC0003DMT400042918 | Potato | nucleus | 17.71 | 30.71 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 4.65 | 30.58 |
| PGSC0003DMT400001808 | Potato | cytosol | 3.97 | 30.28 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 6.01 | 28.47 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:102597432 | MapMan:16.10.2.1.1 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | ncoils:Coil | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006412 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0016891 | GO:GO:0019538 | GO:GO:0031047 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:0090501 |
| GO:GO:0090502 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| UniProt:M1ASJ7 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | PFAM:PF04851 | PFAM:PF14709 | EnsemblPlantsGene:PGSC0003DMG400011259 |
| PGSC:PGSC0003DMG400011259 | EnsemblPlants:PGSC0003DMT400029301 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF44 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 |
| SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0002966AA6 | RefSeq:XP_006352611.1 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
Endoribonuclease Dicer homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400011259]
Coordinates
chr10:-:314229..336748
Molecular Weight (calculated)
214298.0 Da
IEP (calculated)
6.405
GRAVY (calculated)
-0.421
Length
1914 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGDGGGVSD KPSYWIDAYE DISCDDLIQD FVGSNTVPVV PSNQLGPDGS LDPCFFGGID GILEKLKNGD GSVHSVDGNN SNVHSEALAA PGICKDNGPQ
0101: AKKDVEHNKG DLGKKSLQEG NGFSRHKERG CNDKEERNGK RARLGDDSYQ RRGCDRPLAR KRLRENDEIN RVGRDQRKRR EYHGGRGGRD RNWREGSGFW
0201: EWDKERKEMV YRVGSWEADR NREGKLPTER SREPSGAIEK KDDKLKEQAP KEEARKYQLD VLEHARKNNT IAFLETGAGK TLIAILLMKS LCSDLQKKNK
0301: KMLAVFLVPK VPLVYQQAEV IREQTGYQVG HYCGEMGQDF WDARRWLREF ETKQVLVMTA QILLNILRHS IIKMEAINLL IMDECHHAVK KHPYSLVMSE
0401: FYHTTQKEKR PSVFGMTASP VNLKGVSSQV DCAIKIRNLE TKLDSVVFTI KDRKELEKHV PMPSEVVVEY DKAASLWSFH EQIKQMESAV EEAALLSSRR
0501: SKWQFMGACD AGARGELRQV YGVSERTESD GAANLIQKLR AINYALGELG QWCAYKVAHS FLTALQNDER ASYQLDVKFQ ESYLDKVVSL LQCQLSEGAV
0601: AQSNLNGEMD KGGNPNSDRP DEMEEGELLE SHVVSVGEHV DVILGAAVAD GKVTPKVQSL IKILLKYQHT EDFRAIIFVE RVVTALVLPK VFEELPSLSF
0701: INSSSLIGHN NSQEMRTGQM QDTIAKFRDG RINLLVATSV AEEGLDIRQC NVVIRFDLAK TILAYIQSRG RARKPGSDYI LMVERDNSSH EAFLRNARNS
0801: EETLRKEAIE RTDISHLKDA SKLISAEAPT DSVYQVESTG AVVSLNSAVG LIHFYCSQLP SDRYSILRPE FIMKSHEKSG CPTEYSCRLQ LPCNAPFETL
0901: DGPVCSSMRL AQQAACLDAC KKLHQMGAFT DMLLPDKGSG VESEKVEQDE EGVPIPGTSR HREFYPEGVA DILRGDWILS GKDSLVSSKV IHLYMYAIKC
1001: VNIGPSKDPF LTDVSEFAIL FGNELDAEVL SMSMDLFIAR TVVTKATLVF RGPIDVTEFQ LASLKSFHVR MMSIVLDVDV EPSTTPWDPA KAYLFAPVTG
1101: DESGDPIKGI NWDHIKKITE TGVWGNPLQR ARPDVYLGTN ERALGGDRRE YGFAKLRHGM AVGLKSHPTY GVRGAIAHYD LVQASGLVPN RSSLDDVEVD
1201: LNKDKIMMAD CSLRAEDIVG RIVTAAHSGK RFYVDCIRSD MTAENSFPRK EGYLGPLEYS SYAAYYKQKY GVDLVYKKQP LIRGRGVSYC KNLLSPRFEH
1301: SEEHEGELEE ATDKTYYVFL PPELCVLHPL PGSLVRGAQR LPSIMRRIES MLLAVQLKEM IGYPVPALKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV
1401: SRYLFLKYPQ KHEGQLTRMR QQMVSNMVLY QNALSKGIQS YIQADRFSPS RWAAPGVLPV YDEDLNEDET SIFDHETAEN GTVAAKALAG DEFEDEETEE
1501: GELDNDSGSY RVLSSKTMAD VVEALIGVYY VEGGKYAANH FMKWIGVEVD FDFNFKETEY SIRSCSIPEN VLKSVDFDAL QGALNISFND KGLLLEAITH
1601: ASRPSSGVSC YQRLEFVGDA VLDHLITRHL FFTYTDLPPG RLTDLRAAAV NNENFARVAV KHSLHLHLRH ASSALEKQIR DFVNEVKNEL SKPGFNSFGL
1701: GDCKAPKVLG DIVESIAGAI FLDSGCNTKS VWEVFQPLLH PMVTPETLPM HPVRELQERC QQEAQGLEYK ATRSGNMATV EVYVDGLQVG MAQNPQKKMA
1801: QKLAARNALV VLKEREEAEA KKADDAKKKK NGNPSFTRQT LNDICLRKNW PMPLYRCVHE GGPAHAKRFT YGVRVNISDK GFTDECIGEP MPSVKKAKDS
1901: AAALLLELLN RRYS
0101: AKKDVEHNKG DLGKKSLQEG NGFSRHKERG CNDKEERNGK RARLGDDSYQ RRGCDRPLAR KRLRENDEIN RVGRDQRKRR EYHGGRGGRD RNWREGSGFW
0201: EWDKERKEMV YRVGSWEADR NREGKLPTER SREPSGAIEK KDDKLKEQAP KEEARKYQLD VLEHARKNNT IAFLETGAGK TLIAILLMKS LCSDLQKKNK
0301: KMLAVFLVPK VPLVYQQAEV IREQTGYQVG HYCGEMGQDF WDARRWLREF ETKQVLVMTA QILLNILRHS IIKMEAINLL IMDECHHAVK KHPYSLVMSE
0401: FYHTTQKEKR PSVFGMTASP VNLKGVSSQV DCAIKIRNLE TKLDSVVFTI KDRKELEKHV PMPSEVVVEY DKAASLWSFH EQIKQMESAV EEAALLSSRR
0501: SKWQFMGACD AGARGELRQV YGVSERTESD GAANLIQKLR AINYALGELG QWCAYKVAHS FLTALQNDER ASYQLDVKFQ ESYLDKVVSL LQCQLSEGAV
0601: AQSNLNGEMD KGGNPNSDRP DEMEEGELLE SHVVSVGEHV DVILGAAVAD GKVTPKVQSL IKILLKYQHT EDFRAIIFVE RVVTALVLPK VFEELPSLSF
0701: INSSSLIGHN NSQEMRTGQM QDTIAKFRDG RINLLVATSV AEEGLDIRQC NVVIRFDLAK TILAYIQSRG RARKPGSDYI LMVERDNSSH EAFLRNARNS
0801: EETLRKEAIE RTDISHLKDA SKLISAEAPT DSVYQVESTG AVVSLNSAVG LIHFYCSQLP SDRYSILRPE FIMKSHEKSG CPTEYSCRLQ LPCNAPFETL
0901: DGPVCSSMRL AQQAACLDAC KKLHQMGAFT DMLLPDKGSG VESEKVEQDE EGVPIPGTSR HREFYPEGVA DILRGDWILS GKDSLVSSKV IHLYMYAIKC
1001: VNIGPSKDPF LTDVSEFAIL FGNELDAEVL SMSMDLFIAR TVVTKATLVF RGPIDVTEFQ LASLKSFHVR MMSIVLDVDV EPSTTPWDPA KAYLFAPVTG
1101: DESGDPIKGI NWDHIKKITE TGVWGNPLQR ARPDVYLGTN ERALGGDRRE YGFAKLRHGM AVGLKSHPTY GVRGAIAHYD LVQASGLVPN RSSLDDVEVD
1201: LNKDKIMMAD CSLRAEDIVG RIVTAAHSGK RFYVDCIRSD MTAENSFPRK EGYLGPLEYS SYAAYYKQKY GVDLVYKKQP LIRGRGVSYC KNLLSPRFEH
1301: SEEHEGELEE ATDKTYYVFL PPELCVLHPL PGSLVRGAQR LPSIMRRIES MLLAVQLKEM IGYPVPALKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV
1401: SRYLFLKYPQ KHEGQLTRMR QQMVSNMVLY QNALSKGIQS YIQADRFSPS RWAAPGVLPV YDEDLNEDET SIFDHETAEN GTVAAKALAG DEFEDEETEE
1501: GELDNDSGSY RVLSSKTMAD VVEALIGVYY VEGGKYAANH FMKWIGVEVD FDFNFKETEY SIRSCSIPEN VLKSVDFDAL QGALNISFND KGLLLEAITH
1601: ASRPSSGVSC YQRLEFVGDA VLDHLITRHL FFTYTDLPPG RLTDLRAAAV NNENFARVAV KHSLHLHLRH ASSALEKQIR DFVNEVKNEL SKPGFNSFGL
1701: GDCKAPKVLG DIVESIAGAI FLDSGCNTKS VWEVFQPLLH PMVTPETLPM HPVRELQERC QQEAQGLEYK ATRSGNMATV EVYVDGLQVG MAQNPQKKMA
1801: QKLAARNALV VLKEREEAEA KKADDAKKKK NGNPSFTRQT LNDICLRKNW PMPLYRCVHE GGPAHAKRFT YGVRVNISDK GFTDECIGEP MPSVKKAKDS
1901: AAALLLELLN RRYS
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.