Factsheet for PGSC0003DMT400053499

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g041920.2.1	Tomato	cytosol	81.79	89.47
PGSC0003DMT400086351	Potato	cytosol	39.18	56.16
PGSC0003DMT400001808	Potato	cytosol	46.74	54.18
PGSC0003DMT400001805	Potato	mitochondrion	48.8	48.46
VIT_12s0059g01120.t01	Wine grape	cytosol	42.96	43.55
Bra039552.1-P	Field mustard	cytosol	42.27	43.46
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	41.92	42.96
CDX90592	Canola	cytosol, nucleus, peroxisome	41.92	42.96
CDY22924	Canola	cytosol	41.58	42.76
CDY48286	Canola	cytosol	41.58	42.76
CDY09765	Canola	cytosol, nucleus, peroxisome	41.58	42.61
AT4G15417.2	Thale cress	mitochondrion	40.55	40.83
EES13704	Sorghum	cytosol	38.14	38.14
Os06t0358800-01	Rice	cytosol	39.18	38.13
TraesCS7D01G344100.1	Wheat	cytosol	37.46	35.28
Zm00001d032362_P002	Maize	mitochondrion	39.52	34.95
TraesCS7B01G248100.1	Wheat	cytosol	37.11	34.95
TraesCS7A01G336500.1	Wheat	cytosol	36.77	34.29
TraesCS7D01G344200.1	Wheat	cytosol	36.77	34.19
HORVU7Hr1G082860.4	Barley	plastid	37.8	30.64
PGSC0003DMT400037378	Potato	cytosol	28.52	28.04
PGSC0003DMT400033487	Potato	cytosol	33.33	26.43
TraesCS2D01G479300.1	Wheat	plastid	29.21	24.57
PGSC0003DMT400042918	Potato	nucleus	25.09	6.61
PGSC0003DMT400029301	Potato	nucleus	30.58	4.65
GSMUA_Achr10P...	Banana	extracellular	2.75	4.28
GSMUA_Achr9P22470_001	Banana	cytosol	3.09	2.36
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	1.37	0.99

Protein Annotations

Gene3D:1.10.1520.10	EntrezGene:102598686	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389	UniProt:M1BV17
PFAM:PF00636	EnsemblPlantsGene:PGSC0003DMG400020752	PGSC:PGSC0003DMG400020752	EnsemblPlants:PGSC0003DMT400053499	PFscan:PS50142	PANTHER:PTHR14950
PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065
UniParc:UPI000294F27B	RefSeq:XP_006342288.1	SEG:seg	:	:	:

Description

Dicer-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020752]

Coordinates

chr5:+:32806446..32810021

Molecular Weight (calculated)

33533.0 Da

IEP (calculated)

5.258

GRAVY (calculated)

-0.389

Length

291 amino acids

Sequence
(BLAST)

001: MEMDNNLDYL FGSMEIQPRS STLDQSENQD LSENKVTLEW KKFVEELQEI VGYKFKNVNL LYQAFTHSSF HREDECESYE RLEYIGDSVL NLLIAKAHYF
101: LHLDLAPGQL TRLRAANVDT EKLARVAVKY DFHKYLRHKK PLLKGQVEEF KDAMLEYPLH SSGLIDPPKV LADVVESLIG AIYIDCNFSM DITWQVVENL
201: LQPMITLENL ETHPVTKFYE ACQRNGWSVK LIDTWEKTGE IEVFAGKFAG KGKFSGKKLI ALNRAAHNAY CEIVKNLKTT CDNYNCNEAQ D

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.