Factsheet for TraesCS7A01G336500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G248100.1	Wheat	cytosol	92.95	93.85
TraesCS7D01G344100.1	Wheat	cytosol	92.31	93.2
HORVU7Hr1G082860.4	Barley	plastid	87.82	76.32
EES13704	Sorghum	cytosol	65.06	69.76
Os06t0358800-01	Rice	cytosol	65.06	67.89
Zm00001d032362_P002	Maize	mitochondrion	63.14	59.88
VIT_12s0059g01120.t01	Wine grape	cytosol	38.46	41.81
Bra039552.1-P	Field mustard	cytosol	36.54	40.28
CDY22924	Canola	cytosol	36.54	40.28
Solyc05g041920.2.1	Tomato	cytosol	34.29	40.23
PGSC0003DMT400086351	Potato	cytosol	25.96	39.9
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	36.22	39.79
CDX90592	Canola	cytosol, nucleus, peroxisome	36.22	39.79
CDY09765	Canola	cytosol, nucleus, peroxisome	36.22	39.79
CDY48286	Canola	cytosol	35.9	39.58
PGSC0003DMT400001808	Potato	cytosol	29.81	37.05
AT4G15417.2	Thale cress	mitochondrion	34.29	37.02
PGSC0003DMT400053499	Potato	mitochondrion	34.29	36.77
PGSC0003DMT400001805	Potato	mitochondrion	33.97	36.18
Solyc07g049160.2.1	Tomato	mitochondrion	33.65	35.84
Solyc07g049150.2.1	Tomato	cytosol	28.85	33.58
Solyc05g024210.1.1	Tomato	cytosol	33.01	30.65
TraesCS7A01G513500.1	Wheat	nucleus	30.45	29.97
TraesCS7A01G512700.1	Wheat	mitochondrion	33.01	28.37
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	33.01	27.76
TraesCS5A01G073600.1	Wheat	cytosol, nucleus, plastid	31.09	6.93
TraesCS1A01G160900.1	Wheat	nucleus	31.73	6.08
TraesCS3A01G415400.2	Wheat	nucleus	32.69	6.08
TraesCS2A01G364700.2	Wheat	cytosol	28.85	5.55
TraesCS5A01G516000.1	Wheat	cytosol, nucleus, plastid	34.62	5.48
GSMUA_Achr10P...	Banana	extracellular	2.56	4.28
GSMUA_Achr9P22470_001	Banana	cytosol	1.92	1.57

Protein Annotations

Gene3D:1.10.1520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:IPR000999	InterPro:IPR036389	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50142	PANTHER:PTHR14950
PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065
EnsemblPlantsGene:TraesCS7A01G336500	EnsemblPlants:TraesCS7A01G336500.1	TIGR:cd00593	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:+:492265933..492268143

Molecular Weight (calculated)

34421.9 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.332

Length

312 amino acids

Sequence
(BLAST)

001: MDPHSHSHSL SPPPAPDDDP DAMPREQQQR EEAPPGYVPP MGPEEVAAVE ALLGYEFKDK SLVGLALTHG SFYLPYRSGD STYERLEYLG DGVLTCLVSR
101: EVFLTYPDLP PGPLTRLRAA NVDKEKLARI AVDHGIHRFL RHKAPKLEEQ IADFVKELCQ YEYHSNGLLD APKVLSDIVE SLIGAIYLDS KYNQELVWQV
201: FQKLADPLIR LETLGRHPVS ELLEFGQKSG RIVDISKDGW VKDTKVDVFV DGVLVASATY AQKKEIASNR AAKAALDKLK EMSGQSDVLS APALGEAPEP
301: LDELGRAGAL EL

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.