Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G158000.2 | Wheat | nucleus | 97.97 | 97.91 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 62.2 | 97.68 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 95.82 | 92.63 |
| OQU91611 | Sorghum | nucleus, plastid | 81.01 | 80.51 |
| Os10t0485600-01 | Rice | cytosol, plastid | 80.64 | 80.15 |
| Zm00001d032655_P006 | Maize | nucleus | 75.54 | 78.28 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 52.12 | 53.07 |
| Solyc08g067210.2.1 | Tomato | nucleus | 41.12 | 46.78 |
| KRH61605 | Soybean | nucleus | 46.71 | 45.4 |
| TraesCS3A01G415400.2 | Wheat | nucleus | 44.87 | 43.5 |
| KRH52276 | Soybean | cytosol | 12.97 | 41.95 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 39.34 | 40.51 |
| CDY30942 | Canola | nucleus | 31.28 | 40.36 |
| Bra019456.1-P | Field mustard | nucleus | 34.73 | 39.05 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 45.42 | 38.03 |
| CDY21223 | Canola | nucleus | 35.71 | 37.95 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 6.08 | 31.73 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 25.88 | 30.09 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 5.84 | 29.97 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 6.52 | 28.57 |
| TraesCS7A01G512700.1 | Wheat | mitochondrion | 6.33 | 28.37 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 28.27 | 28.34 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 31.71 | 26.17 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:1.20.1320.30 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0016891 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 |
| SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS1A01G160900 | EnsemblPlants:TraesCS1A01G160900.1 | TIGR:cd00046 |
| TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1A:+:289334317..289346216
Molecular Weight (calculated)
184027.0 Da
IEP (calculated)
6.830
GRAVY (calculated)
-0.169
Length
1627 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAMADDDDGP LPPPPPPPPP RRPHRQLQPR RYQVEVFEAA LQGNTIAVLD TGSGKTMVAV LLARHHVGRV RAGEVPRRIV FFLAPTVHLV HQQFEVIREY
0101: TDLDAAECYG ASGVGDWSTD RWNKEVGSKE IAVMTPQILL DALRHAFVTM SAVSLLIFDE CHRACGNHPY TRIMKEFYLG SQWRPAVFGM TASPVATKGT
0201: CTVQDCEAHI GQLELTLDAK VYIIKDRSEL ESFSPPATIV HEYYDAYSID FEDLKSKLQI LYEEYDALLA SLQESSPNKF EDTNNILETS RKTLFRYHEK
0301: IFYGLNYLGP IITAEVVKIY NESIKTLGDS EDCLFSKASF SLHVAYFKEA LDLIEEVLPH GYGELMKSES GSAELIKRGY ISSKVDALIN IFKSFGSSNE
0401: VLCLIFVDRI MTAKAVERFM RGIVSFSSFS ISYLTGGSTS KDSLSPAVQR YTLDLFRSGK VNLLFTTDVT EEGIDVPNCS CVIRFDLPRT VCSYVQSRGR
0501: ARRSSSNYVL MIERGNMDQQ EHIFRIIRTE YYIKHFALYR HKNPNVSSSE WPMQDKYAYY VDSTGATITA DCCVDLIRKY CEKLPKDRYY MPKPSFAVAI
0601: EDGSYQCTLT LPPNAAFQRI VGPLCSTSNL AKQLVSLDAC KKLHQLGELN DHLLPFTEEP IEIDVALRDG KFLSGPGTTK RKELHGTRNV LALSGSWIHE
0701: SESVTLNAYR FDFLCDQEGE NYAGFVLLME SALDDDVACS KMDLFLIPNK MVYTTVTPCG KVQLDKKQLR DGKLFQEFFF NGIFGRLFHG SRTSGVQREF
0801: LFRKGHEIQW SSESMYLLLP LRHSPHIQQD LNIYWEAVES CTQAVEQLRN LYLEDENIRA NFIQHRSIKE KDIIHLANKS LHFSSIKDSV VLSLHTGRIY
0901: SVLDLIYDTT AEDSFEEMYN GKASPFSSFM DYYREKYGIV IQHPKQPLLL LKQSHNAHNL LFSKSKYIDG STGDPLLMEK EQIHARVPPE LLIHIDVTIE
1001: VLKSFYLLPS VMHRLQSLML ASQLRRDIGY TQHIPSYLIL EAITTLRCCE TFSLERLELL GDSVLKYVIG CDLFLRYPMK HEGHLSDMRS NAVCNATLHK
1101: HGIWRSLQGY VRDSAFDPRR WVAPGQISLR PFPCNCGIET AFVPTNGRYI SDDPSFVVGK PCDRAHRWMC SKAISDCVEA LVGAYYVGGG IVAALWVMKW
1201: FGIEIKCDRK LVQEVKLNAS YICYLPKISV IEELEAKLKY NFSVKGLLLE AITHPSLQEL GVDYCYQRLE FLGDSVLDLL ITRYLYVTHT DVDPGELTDL
1301: RSALVSNENF AEVVLRNNIH SHLQHGSGIL LEQITEYVRS NLECQGKVNK FLQHATCKVP KVLGDIMESI AGAIFVDTDF NVDVVWKIVE PLLSPMITPD
1401: NLALPPYREL LELCSHLGYF INSKCSSKGE EVSIEMSVQL RDELLIAQGQ DRNKKSAKAK AAARILADLK KRGLSMKQCP SKAKQSGIIS SDQQYPLASL
1501: ESPLDYCQVN VNPSLGGLPS LKEAVVLRLK MDKGGPRSAL FKLCKRLQWP MPEFEFVEQR FRTPIVLDGV TTTNFNSFVS TITLHIPDVA AITLQGERRT
1601: DKKSSQDSAS LTMLHKLQEL KVCICKT
0101: TDLDAAECYG ASGVGDWSTD RWNKEVGSKE IAVMTPQILL DALRHAFVTM SAVSLLIFDE CHRACGNHPY TRIMKEFYLG SQWRPAVFGM TASPVATKGT
0201: CTVQDCEAHI GQLELTLDAK VYIIKDRSEL ESFSPPATIV HEYYDAYSID FEDLKSKLQI LYEEYDALLA SLQESSPNKF EDTNNILETS RKTLFRYHEK
0301: IFYGLNYLGP IITAEVVKIY NESIKTLGDS EDCLFSKASF SLHVAYFKEA LDLIEEVLPH GYGELMKSES GSAELIKRGY ISSKVDALIN IFKSFGSSNE
0401: VLCLIFVDRI MTAKAVERFM RGIVSFSSFS ISYLTGGSTS KDSLSPAVQR YTLDLFRSGK VNLLFTTDVT EEGIDVPNCS CVIRFDLPRT VCSYVQSRGR
0501: ARRSSSNYVL MIERGNMDQQ EHIFRIIRTE YYIKHFALYR HKNPNVSSSE WPMQDKYAYY VDSTGATITA DCCVDLIRKY CEKLPKDRYY MPKPSFAVAI
0601: EDGSYQCTLT LPPNAAFQRI VGPLCSTSNL AKQLVSLDAC KKLHQLGELN DHLLPFTEEP IEIDVALRDG KFLSGPGTTK RKELHGTRNV LALSGSWIHE
0701: SESVTLNAYR FDFLCDQEGE NYAGFVLLME SALDDDVACS KMDLFLIPNK MVYTTVTPCG KVQLDKKQLR DGKLFQEFFF NGIFGRLFHG SRTSGVQREF
0801: LFRKGHEIQW SSESMYLLLP LRHSPHIQQD LNIYWEAVES CTQAVEQLRN LYLEDENIRA NFIQHRSIKE KDIIHLANKS LHFSSIKDSV VLSLHTGRIY
0901: SVLDLIYDTT AEDSFEEMYN GKASPFSSFM DYYREKYGIV IQHPKQPLLL LKQSHNAHNL LFSKSKYIDG STGDPLLMEK EQIHARVPPE LLIHIDVTIE
1001: VLKSFYLLPS VMHRLQSLML ASQLRRDIGY TQHIPSYLIL EAITTLRCCE TFSLERLELL GDSVLKYVIG CDLFLRYPMK HEGHLSDMRS NAVCNATLHK
1101: HGIWRSLQGY VRDSAFDPRR WVAPGQISLR PFPCNCGIET AFVPTNGRYI SDDPSFVVGK PCDRAHRWMC SKAISDCVEA LVGAYYVGGG IVAALWVMKW
1201: FGIEIKCDRK LVQEVKLNAS YICYLPKISV IEELEAKLKY NFSVKGLLLE AITHPSLQEL GVDYCYQRLE FLGDSVLDLL ITRYLYVTHT DVDPGELTDL
1301: RSALVSNENF AEVVLRNNIH SHLQHGSGIL LEQITEYVRS NLECQGKVNK FLQHATCKVP KVLGDIMESI AGAIFVDTDF NVDVVWKIVE PLLSPMITPD
1401: NLALPPYREL LELCSHLGYF INSKCSSKGE EVSIEMSVQL RDELLIAQGQ DRNKKSAKAK AAARILADLK KRGLSMKQCP SKAKQSGIIS SDQQYPLASL
1501: ESPLDYCQVN VNPSLGGLPS LKEAVVLRLK MDKGGPRSAL FKLCKRLQWP MPEFEFVEQR FRTPIVLDGV TTTNFNSFVS TITLHIPDVA AITLQGERRT
1601: DKKSSQDSAS LTMLHKLQEL KVCICKT
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.