Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G177600.1 | Wheat | nucleus | 51.37 | 81.18 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 80.15 | 80.64 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 80.09 | 80.53 |
| OQU91611 | Sorghum | nucleus, plastid | 78.62 | 78.62 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 80.09 | 77.9 |
| Zm00001d032655_P006 | Maize | nucleus | 74.59 | 77.77 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 52.6 | 53.88 |
| Solyc08g067210.2.1 | Tomato | nucleus | 40.75 | 46.64 |
| Os01t0909200-01 | Rice | cytosol | 46.73 | 46.34 |
| KRH61605 | Soybean | nucleus | 46.0 | 44.98 |
| KRH52276 | Soybean | cytosol | 12.77 | 41.55 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 38.79 | 40.19 |
| CDY30942 | Canola | nucleus | 30.73 | 39.89 |
| Bra019456.1-P | Field mustard | nucleus | 34.27 | 38.77 |
| CDY21223 | Canola | nucleus | 35.55 | 38.01 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 44.72 | 37.67 |
| Os06t0358800-01 | Rice | cytosol | 5.56 | 30.43 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 5.74 | 29.65 |
| Os03t0583900-01 | Rice | nucleus | 25.29 | 29.36 |
| Os04t0509300-02 | Rice | cytosol | 28.28 | 27.94 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 29.38 | 25.54 |
| Os01t0551100-01 | Rice | cytosol | 3.79 | 24.22 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 2.08 | 23.78 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:1.20.1320.30 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | ProteinID:AAL59041.1 | ProteinID:AAP54346.1 | EMBL:AP014966 | ProteinID:BAF26812.2 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0004525 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0030422 | GO:GO:0031047 |
| GO:GO:0040029 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 |
| InterPro:IPR036389 | InterPro:IPR038248 | EnsemblPlantsGene:Os10g0485600 | EnsemblPlants:Os10t0485600-01 | InterPro:P-loop_NTPase | InterPro:PAZ_dom |
| InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 |
| ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | UniProt:Q7XD96 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF69065 |
| UniParc:UPI0001A65351 | SEG:seg | : | : | : | : |
Description
DICER-LIKE 3BDicer-like protein, Phased small RNA biogenesis (Os10t0485600-01)
Coordinates
chr10:+:18360484..18372591
Molecular Weight (calculated)
184735.0 Da
IEP (calculated)
6.745
GRAVY (calculated)
-0.167
Length
1637 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADDEAAVLP PPPPLPPPCR PHRQLRPRGS RPTADTTPRT SQLVEVFEAA LRGNTIAVLD TGSGKTMVAV MLAREHARRV RAGEAPRRIV VFLAPTVHLV
0101: HQQFEVIREY TDLDVMMCSG ASRVGEWGAD HWKEEVGRNE IVVMTPQILL DALRHAFLTM SAVSLLIFDE CHRACGSHPY ARIMKEFYFG SQWRPDVFGM
0201: TASPVATKGA STLHNCEAHI SQLELTLDAK IYIVEDRNEL ESFSPPTTIV NKYYDAYMVD FDNLKSKLQI FSDEFDSLLV GLQESPSNKF KDTDNILETS
0301: RKSLSRYHGK ILYSLNDLGP IITSEVVKIH IESVKPLCDS EDCIFSKASL CLHMSYFKEA LSLIEEILPQ GYGELMKSES GSEELTKRGY ISSKVNTLIN
0401: IFKSFGSSNE VLCLIFVDRI ITAKAVERFM RGIVNFSCFS ISYLTGGSTS KDALSPAVQR FTLDLFRAGK VNLLFTTDVT EEGVDVPNCS CVIRFDLPRT
0501: VCSYVQSRGR ARRNNSEFIL MIERGNLQQQ EHIFRMIQTG YYVKNCALYR HPNALSYDLS IQGMYTYQVQ STGATITADC CVNLIRKYCE KLPKDRYFMP
0601: KPSFEVTIED GLFKCTLTLP RNAAFQSIVG PLSSSSNLSK QLVSLEACKK LHQLGELNDH LVPLTEEPMD TDFTTADEKC ISGPGTTKRK ELHGTTCVLA
0701: LSGTWIHDSE NITLNTYRID FLCDQEGENY AGFVLLMEPE LDDDVAPSKM DLFLIPNKMV YTTVTPRGKV QLNKKQLGKG KLFQEFFFNG IFGRLFHGSR
0801: KSGAQRDFIF KKGHEIQWNT ESMYLLLPLR DSSYIQDDLS IHWEAIESCA GAVEQLWSSY QGDENVIPVN CIPQKRRGGQ EEIIHLANKS LHCSSIKDSV
0901: VLSLHTGRIY TVLDLILDTT AEDSFDEMCK GKASPFTSFV DYYHQKYGII IQHPEQPLLL LKQSHNAHNL LFSKLKYLDG STGKPLLMEK EQIHARVPPE
1001: LLIHLDVTTD ILKSFYLLPS VIHRLQSLML ASQLRREIGY NQHIPVTLIL EAITTLRCCE TFSLERLELL GDSVLKYVVG CDLFLRYPMK HEGQLSDMRS
1101: KAVCNATLHK HGIWRSLQGY VRDNAFDPRR WVAPGQISLR PFPCNCGIET AFVPSHRRYI RDDPSFFVGK PCDRGHRWMC SKTISDCVEA LVGAYYVGGG
1201: IAAALWVMRW FGIDIKCDMK LLQEVKFNAS HLCSLSKIND IEELEAKLKY NFSVKGLLLE AITHPSLQEL GVDYCYQRLE FLGDSVLDLL LTRHLYATHT
1301: DVDPGELTDL RSALVSNENF AQAVVRNNIH SHLQHGSGIL LEQITEYVRS NLECQGKESE FLQHTTCKVP KVLGDIMESI AGAVFIDTDF NVDMVWEIFE
1401: PLLSPLITPD KLALPPYREL LELCSHIGCF LNSKCTSKGE EVIIEMSLQL RDELLVAQGH DRNKKRAKAK AASRILADLK QQGLSIKQCL SKAKQLDIVT
1501: SDLQFDLTSS GTQLSYSDLN DYHILEGLSS VKKEVVLPLK MEKGGPRSAL FKLCKILQWP MPEFEFVEQR FRTPIVMDGA TTTNFNSFVS TITLHIPDAT
1601: TITFQGERRT DKKSAQDSAS LMMLHKLQEL KICICKT
0101: HQQFEVIREY TDLDVMMCSG ASRVGEWGAD HWKEEVGRNE IVVMTPQILL DALRHAFLTM SAVSLLIFDE CHRACGSHPY ARIMKEFYFG SQWRPDVFGM
0201: TASPVATKGA STLHNCEAHI SQLELTLDAK IYIVEDRNEL ESFSPPTTIV NKYYDAYMVD FDNLKSKLQI FSDEFDSLLV GLQESPSNKF KDTDNILETS
0301: RKSLSRYHGK ILYSLNDLGP IITSEVVKIH IESVKPLCDS EDCIFSKASL CLHMSYFKEA LSLIEEILPQ GYGELMKSES GSEELTKRGY ISSKVNTLIN
0401: IFKSFGSSNE VLCLIFVDRI ITAKAVERFM RGIVNFSCFS ISYLTGGSTS KDALSPAVQR FTLDLFRAGK VNLLFTTDVT EEGVDVPNCS CVIRFDLPRT
0501: VCSYVQSRGR ARRNNSEFIL MIERGNLQQQ EHIFRMIQTG YYVKNCALYR HPNALSYDLS IQGMYTYQVQ STGATITADC CVNLIRKYCE KLPKDRYFMP
0601: KPSFEVTIED GLFKCTLTLP RNAAFQSIVG PLSSSSNLSK QLVSLEACKK LHQLGELNDH LVPLTEEPMD TDFTTADEKC ISGPGTTKRK ELHGTTCVLA
0701: LSGTWIHDSE NITLNTYRID FLCDQEGENY AGFVLLMEPE LDDDVAPSKM DLFLIPNKMV YTTVTPRGKV QLNKKQLGKG KLFQEFFFNG IFGRLFHGSR
0801: KSGAQRDFIF KKGHEIQWNT ESMYLLLPLR DSSYIQDDLS IHWEAIESCA GAVEQLWSSY QGDENVIPVN CIPQKRRGGQ EEIIHLANKS LHCSSIKDSV
0901: VLSLHTGRIY TVLDLILDTT AEDSFDEMCK GKASPFTSFV DYYHQKYGII IQHPEQPLLL LKQSHNAHNL LFSKLKYLDG STGKPLLMEK EQIHARVPPE
1001: LLIHLDVTTD ILKSFYLLPS VIHRLQSLML ASQLRREIGY NQHIPVTLIL EAITTLRCCE TFSLERLELL GDSVLKYVVG CDLFLRYPMK HEGQLSDMRS
1101: KAVCNATLHK HGIWRSLQGY VRDNAFDPRR WVAPGQISLR PFPCNCGIET AFVPSHRRYI RDDPSFFVGK PCDRGHRWMC SKTISDCVEA LVGAYYVGGG
1201: IAAALWVMRW FGIDIKCDMK LLQEVKFNAS HLCSLSKIND IEELEAKLKY NFSVKGLLLE AITHPSLQEL GVDYCYQRLE FLGDSVLDLL LTRHLYATHT
1301: DVDPGELTDL RSALVSNENF AQAVVRNNIH SHLQHGSGIL LEQITEYVRS NLECQGKESE FLQHTTCKVP KVLGDIMESI AGAVFIDTDF NVDMVWEIFE
1401: PLLSPLITPD KLALPPYREL LELCSHIGCF LNSKCTSKGE EVIIEMSLQL RDELLVAQGH DRNKKRAKAK AASRILADLK QQGLSIKQCL SKAKQLDIVT
1501: SDLQFDLTSS GTQLSYSDLN DYHILEGLSS VKKEVVLPLK MEKGGPRSAL FKLCKILQWP MPEFEFVEQR FRTPIVMDGA TTTNFNSFVS TITLHIPDAT
1601: TITFQGERRT DKKSAQDSAS LMMLHKLQEL KICICKT
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.