Factsheet for Os05t0271300-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0551100-01
Os02t0565000-01
Os02t0747400-01
Os04t0445600-00
Os04t0654700-02
Os05t0271300-00
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	Os02t0565000-01	AT1G54060.1	21798944
AT3G20420.1	Os04t0445600-00	AT1G54060.1	21798944
AT3G20420.1	Os04t0654700-02	AT1G71230.1	21798944
AT3G20420.1	Os01t0551100-01	AT3G20420.1	21798944
AT3G20420.1	Os05t0271300-00	AT3G20420.1	21798944
AT3G20420.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G20420.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G513500.1	Wheat	nucleus	81.39	81.39
HORVU7Hr1G115000.1	Barley	nucleus	45.11	76.06
Zm00001d009879_P002	Maize	plastid	83.6	70.48
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	80.44	69.29
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	81.07	69.09
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	79.5	67.92
TraesCS7A01G512700.1	Wheat	mitochondrion	77.6	67.77
TraesCS7D01G504300.3	Wheat	mitochondrion	78.86	67.57
TraesCS7B01G430900.2	Wheat	mitochondrion	79.5	67.38
TraesCSU01G086900.1	Wheat	mitochondrion	77.29	66.04
TraesCS7B01G428200.1	Wheat	mitochondrion	76.03	66.03
HORVU7Hr1G115100.2	Barley	plastid	79.5	61.76
KXG21693	Sorghum	plastid	82.02	58.82
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	53.63	49.85
Solyc10g006210.1.1	Tomato	cytosol	16.09	47.22
Os01t0551100-01	Rice	cytosol	36.59	45.31
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	56.15	43.73
VIT_19s0090g00940.t01	Wine grape	cytosol	46.06	43.32
GSMUA_Achr2P15170_001	Banana	cytosol	46.06	42.94
PGSC0003DMT400033487	Potato	cytosol	47.63	41.14
PGSC0003DMT400037378	Potato	cytosol	38.17	40.88
KRH14361	Soybean	cytosol	44.16	40.58
CDY54644	Canola	cytosol	41.32	39.1
Bra035784.1-P	Field mustard	cytosol	41.32	39.1
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	47.0	38.11
AT3G20420.1	Thale cress	plastid	44.48	36.06
CDY29825	Canola	plastid	42.59	36.0
Os06t0358800-01	Rice	cytosol	32.81	34.78
Os09t0315050-00	Rice	cytosol, extracellular, nucleus	11.36	25.17
AT5G45150.1	Thale cress	cytosol	30.91	10.24
Os03t0583900-01	Rice	nucleus	26.18	5.89
Os10t0485600-01	Rice	cytosol, plastid	29.65	5.74
Os01t0909200-01	Rice	cytosol	29.34	5.63
Os03t0121800-01	Rice	cytosol, nucleus, plasma membrane	33.44	5.63
Os04t0509300-02	Rice	cytosol	28.71	5.49

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	ProteinID:AAT85223.1	ProteinID:AAV67838.1	ProteinID:BAF16975.1
ProteinID:BAS93091.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029	GO:GO:0046872
GO:GO:0090305	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389
EnsemblPlantsGene:Os05g0271300	EnsemblPlants:Os05t0271300-00	PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50137
PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	UniProt:Q6ATG6	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI0001A65386	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

Hypothetical conserved gene. (Os05t0271300-00)

Coordinates

chr5:+:10945629..10947989

Molecular Weight (calculated)

34956.3 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.231

Length

317 amino acids

Sequence
(BLAST)

001: MAPPPAMKPA SRKRGPPAPD PVELPPPGFV ADRAEAAARV ERLLRYQFRD GRLLEEALTH QSFADDAVSY QRLEFVGDSA LGLAFSNFLY LTNPTLGPGP
101: LSTLRAANIS TEKLARVAVR HDLYPLLRRN CPRLDLLVGQ FIETVKQEPE DDLSTVPYGG SVVKAPKVLA DIVEAIAAAV YVDCKFDLEK LWKVTRWLFE
201: PIITAETIDE QPVTMLHELC QKHGKMAQFK TWQKGGMTVV NVFVAGELVG IGSSEQKVIA KLNAARDATR KLAGAKKQVL TTGVGNGLGD EIGELRECKQ
301: KLNEQCSRQN WPKPIFK

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.