Factsheet for VIT_19s0090g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_09s0002g00720.t01
VIT_17s0000g06020.t01
VIT_19s0090g00940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	VIT_09s0002g00720.t01	AT1G54060.1	21798944
AT3G20420.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT3G20420.1	VIT_19s0090g00940.t01	AT3G20420.1	21798944
AT3G20420.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14361	Soybean	cytosol	62.02	60.58
PGSC0003DMT400033487	Potato	cytosol	63.2	58.04
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	54.3	53.67
Bra035784.1-P	Field mustard	cytosol	53.12	53.43
CDY54644	Canola	cytosol	53.12	53.43
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	61.72	53.2
CDY29825	Canola	plastid	53.71	48.27
GSMUA_Achr2P15170_001	Banana	cytosol	47.77	47.35
AT3G20420.1	Thale cress	plastid	53.71	46.29
TraesCS7D01G504300.3	Wheat	mitochondrion	50.74	46.22
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	50.45	46.2
Os05t0271300-00	Rice	cytosol, nucleus, plastid	43.32	46.06
Zm00001d009879_P002	Maize	plastid	51.34	46.01
TraesCS7A01G512700.1	Wheat	mitochondrion	49.55	46.01
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	50.74	45.97
TraesCS7A01G513500.1	Wheat	nucleus	43.03	45.74
TraesCS7B01G430900.2	Wheat	mitochondrion	50.74	45.72
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.15	45.55
TraesCSU01G086900.1	Wheat	mitochondrion	49.85	45.28
TraesCS7B01G428200.1	Wheat	mitochondrion	48.96	45.21
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	54.3	44.96
HORVU7Hr1G115000.1	Barley	nucleus	24.33	43.62
HORVU7Hr1G115100.2	Barley	plastid	48.96	40.44
KXG21693	Sorghum	plastid	51.63	39.37
Os01t0551100-01	Rice	cytosol	26.41	34.77
VIT_12s0059g01120.t01	Wine grape	cytosol	28.49	33.45
AT5G45150.1	Thale cress	cytosol	37.09	13.06
VIT_11s0149g00120.t01	Wine grape	cytosol	27.3	7.43
VIT_15s0048g02380.t01	Wine grape	cytosol, nucleus, plastid	32.05	5.54
VIT_04s0023g00920.t01	Wine grape	cytosol, nucleus, plastid	22.26	5.38
VIT_04s0008g02170.t01	Wine grape	mitochondrion	29.67	5.15
VIT_04s0008g02150.t01	Wine grape	cytosol	0.89	0.87
VIT_11s0149g00100.t01	Wine grape	cytosol	0.3	0.5

Protein Annotations

Gene3D:1.10.1520.10	EntrezGene:100243580	wikigene:100243580	MapMan:12.5.1.12	Gene3D:3.30.160.20	ProteinID:CBI26675
ProteinID:CBI26675.3	ncoils:Coil	UniProt:D7T816	EMBL:FN595751	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422
GO:GO:0040029	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389
EntrezGene:LOC100243580	wikigene:LOC100243580	PFAM:PF00035	PFAM:PF00636	PFAM:PF14709	PFscan:PS50137
PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358
SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	TIGR:TC65491	UniParc:UPI00015C77E9	ArrayExpress:VIT_19s0090g00940
EnsemblPlantsGene:VIT_19s0090g00940	EnsemblPlants:VIT_19s0090g00940.t01	unigene:Vvi.4241	RefSeq:XP_002278706	RefSeq:XP_002278706.1	InterPro:dsRBD_dom

Description

No Description!

Coordinates

chr19:+:7054643..7059062

Molecular Weight (calculated)

37470.8 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.235

Length

337 amino acids

Sequence
(BLAST)

001: MEASVEAVER IINYKFRNKK LLEEALTHSS YTDSASYQRL EFIGDAALGC ALSNYVFLAY PSLDPGQLSL IRAANISTEK LARVAVRVGL YQYVRHNAAA
101: LDDKVREFAL AVQEEGDSVL YGGSVKAPKF LADIVESVAA AIYVDCNFDL QVLWVIFRGL LEPIVTHEAL QQQPQPVTLL YELCQKDGKH VDIKHWRKGS
201: KNIASVYVGG KFIASGSSDE KEIAKLNAAK EALQKLSSKL KDTEMTQNNL EINGSCEIDG AKQKLHEFCS KKKWPKPSYR IEKEVGPAHE KGFLCSVHIE
301: TVDGVLVMQG DTKPRVKDAE NSAASFMICT LYESRYP

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.