Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G504300.3 | Wheat | mitochondrion | 96.77 | 97.3 |
| TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 96.24 | 97.28 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 95.97 | 95.45 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 80.91 | 94.95 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 93.01 | 93.26 |
| TraesCSU01G086900.1 | Wheat | mitochondrion | 92.47 | 92.72 |
| HORVU7Hr1G115000.1 | Barley | nucleus | 44.89 | 88.83 |
| HORVU7Hr1G115100.2 | Barley | plastid | 90.05 | 82.11 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 69.09 | 81.07 |
| Zm00001d009879_P002 | Maize | plastid | 77.69 | 76.86 |
| KXG21693 | Sorghum | plastid | 75.54 | 63.57 |
| GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 52.42 | 57.18 |
| VIT_19s0090g00940.t01 | Wine grape | cytosol | 45.97 | 50.74 |
| Solyc10g006210.1.1 | Tomato | cytosol | 14.52 | 50.0 |
| GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 54.3 | 49.63 |
| GSMUA_Achr2P15170_001 | Banana | cytosol | 44.62 | 48.82 |
| PGSC0003DMT400033487 | Potato | cytosol | 45.7 | 46.32 |
| KRH14361 | Soybean | cytosol | 42.74 | 46.09 |
| CDY54644 | Canola | cytosol | 40.05 | 44.48 |
| Bra035784.1-P | Field mustard | cytosol | 40.05 | 44.48 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 44.89 | 42.71 |
| PGSC0003DMT400037378 | Potato | cytosol | 32.53 | 40.88 |
| CDY29825 | Canola | plastid | 40.05 | 39.73 |
| AT3G20420.1 | Thale cress | plastid | 40.05 | 38.11 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 28.49 | 34.3 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 27.42 | 32.59 |
| TraesCS2D01G479300.1 | Wheat | plastid | 24.46 | 26.3 |
| AT5G45150.1 | Thale cress | cytosol | 29.3 | 11.39 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 29.57 | 6.77 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 27.15 | 6.2 |
| TraesCS3D01G411200.6 | Wheat | nucleus | 27.15 | 6.18 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 32.53 | 5.98 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 20.7 | 5.5 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.12 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 | PFAM:PF00636 | PFAM:PF14709 |
| ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS7D01G398600 |
| EnsemblPlants:TraesCS7D01G398600.2 | TIGR:cd00048 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:-:514896374..514901222
Molecular Weight (calculated)
40932.5 Da
IEP (calculated)
8.471
GRAVY (calculated)
-0.186
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKPGSRKRR ASPPAPSAPV TLPPPGFVAD REEAAARVER LLQYQFNNRS LLEEALTHQS FAAASYQRLE FVGDAALGLA FSNFLYLTNP TVGPGALSTL
101: RAANISTEKL ARVAVRHDLY PLLRRNCPRL DLLVGQFIQS VKQELEDDLG TTPYGGSVFK APKVLADMVE AIAAAVYVDC NFNLEKLWKV TRFLFEPIVT
201: AETIDEQPVS MLHELCQKHG KDVKFKTWQK GGTTVVNVFV GGALVGMGSS EQMVIAKLNA TRDALSKLLG GGNQQVLTTG VGHGLGVEVG ELRECKQKLI
301: EQCSRKHWPK PIFKLEKEDG PAHDRTFVYS VQVEAQGGIW VTLSDKMSRV KDAENSCAQK MLEHLLKLDP CT
101: RAANISTEKL ARVAVRHDLY PLLRRNCPRL DLLVGQFIQS VKQELEDDLG TTPYGGSVFK APKVLADMVE AIAAAVYVDC NFNLEKLWKV TRFLFEPIVT
201: AETIDEQPVS MLHELCQKHG KDVKFKTWQK GGTTVVNVFV GGALVGMGSS EQMVIAKLNA TRDALSKLLG GGNQQVLTTG VGHGLGVEVG ELRECKQKLI
301: EQCSRKHWPK PIFKLEKEDG PAHDRTFVYS VQVEAQGGIW VTLSDKMSRV KDAENSCAQK MLEHLLKLDP CT
001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
Arabidopsis Description
RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.