Factsheet for GSMUA_Achr2P15170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15170_001
GSMUA_Achr3P05880_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P11120_001
GSMUA_Achr7P11130_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT3G20420.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT3G20420.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944
AT3G20420.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT3G20420.1	GSMUA_Achr2P15170_001	AT3G20420.1	21798944
AT3G20420.1	GSMUA_Achr7P11120_001	AT3G20420.1	21798944
AT3G20420.1	GSMUA_Achr7P11130_001	AT3G20420.1	21798944
AT3G20420.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT3G20420.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT3G20420.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT3G20420.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	60.88	60.7
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	62.35	52.09
VIT_19s0090g00940.t01	Wine grape	cytosol	47.35	47.77
Solyc10g006210.1.1	Tomato	cytosol	14.71	46.3
Os05t0271300-00	Rice	cytosol, nucleus, plastid	42.94	46.06
TraesCS7A01G512700.1	Wheat	mitochondrion	48.82	45.73
TraesCS7A01G513500.1	Wheat	nucleus	42.35	45.43
TraesCS7D01G504300.3	Wheat	mitochondrion	49.41	45.41
KRH14361	Soybean	cytosol	45.88	45.22
TraesCS7B01G430900.2	Wheat	mitochondrion	49.71	45.19
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	48.82	45.11
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.82	44.74
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	48.82	44.62
TraesCS7B01G428200.1	Wheat	mitochondrion	47.65	44.38
Zm00001d009879_P002	Maize	plastid	48.82	44.15
TraesCSU01G086900.1	Wheat	mitochondrion	47.06	43.13
PGSC0003DMT400033487	Potato	cytosol	46.47	43.05
Bra035784.1-P	Field mustard	cytosol	42.35	42.99
CDY54644	Canola	cytosol	42.35	42.99
HORVU7Hr1G115000.1	Barley	nucleus	22.65	40.96
HORVU7Hr1G115100.2	Barley	plastid	48.24	40.2
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	45.29	39.39
CDY29825	Canola	plastid	42.94	38.93
PGSC0003DMT400037378	Potato	cytosol	32.94	37.84
KXG21693	Sorghum	plastid	49.12	37.78
Os01t0551100-01	Rice	cytosol	28.24	37.5
AT3G20420.1	Thale cress	plastid	41.76	36.32
GSMUA_Achr10P...	Banana	nucleus	28.53	14.63
AT5G45150.1	Thale cress	cytosol	30.29	10.76
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	28.53	7.12
GSMUA_Achr8P12350_001	Banana	nucleus	35.29	6.6
GSMUA_Achr5P10880_001	Banana	cytosol	26.76	5.69
GSMUA_Achr10P...	Banana	extracellular	1.76	3.21
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	6.18	1.88
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	0.59	1.39
GSMUA_Achr9P22470_001	Banana	cytosol	1.18	1.05
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502
EnsemblPlantsGene:GSMUA_Achr2G15170_001	EnsemblPlants:GSMUA_Achr2P15170_001	EnsemblPlants:GSMUA_Achr2T15170_001	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389
UniProt:M0S858	PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535
SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI000294E50A	InterPro:dsRBD_dom	SEG:seg	:

Description

Ribonuclease 3-like protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15170_001]

Coordinates

chr2:+:16581293..16582556

Molecular Weight (calculated)

38264.1 Da

IEP (calculated)

5.681

GRAVY (calculated)

-0.138

Length

340 amino acids

Sequence
(BLAST)

001: MRLAVTEIER LLNYTFRDPS LLEEALTHSS YAGHRSYERL EFVGDAVLGL AITSFFYLSD PTLEPRFLTE LRIANASTEK LARVAVRHRL YRFLRRICRD
101: LDQLVSKFTD LAMMEPEEDI VQMTYGGTTL EAPKVLADIV ESIAAAVYFD CDSDLQLFWT VFRGILEPII TPEMMMEHPV MALYKLCQKH RKIVDISSSF
201: DGSSNTVKVV VDGEVMGIGF SKQKNLARLH AARDALQRLS ALQAADREEG DAGAEAEVGA KQKLNELCNK KHWMNPTYRI EQEQGPDHCK TFICSVQVKT
301: EDKIFVISGD SKPKVRVAEN SAAFKMLTEV LGDAIIPSCT

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.