Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P20990_001 | Banana | nucleus | 86.76 | 88.06 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 77.57 | 78.15 |
| CDY36943 | Canola | nucleus | 33.46 | 48.15 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 58.82 | 47.62 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 62.13 | 45.92 |
| Zm00001d052256_P001 | Maize | cytosol, nucleus, peroxisome | 65.44 | 45.76 |
| EES07255 | Sorghum | nucleus | 65.81 | 44.97 |
| EER88112 | Sorghum | nucleus | 64.71 | 44.67 |
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 62.13 | 44.59 |
| Zm00001d018045_P001 | Maize | cytosol, nucleus, peroxisome | 65.44 | 44.5 |
| TraesCS6D01G285600.1 | Wheat | nucleus | 65.44 | 44.39 |
| TraesCS6A01G306500.1 | Wheat | nucleus | 65.81 | 44.31 |
| HORVU6Hr1G075650.1 | Barley | nucleus | 65.44 | 44.28 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 65.44 | 44.28 |
| Os02t0747400-01 | Rice | nucleus | 66.18 | 43.9 |
| Os06t0226700-01 | Rice | nucleus | 62.13 | 43.67 |
| CDY24170 | Canola | nucleus | 38.97 | 43.62 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 57.72 | 42.2 |
| TraesCS7D01G187600.1 | Wheat | cytosol | 60.66 | 41.25 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 60.29 | 41.0 |
| PGSC0003DMT400083148 | Potato | nucleus | 60.66 | 40.24 |
| Solyc03g116320.2.1 | Tomato | nucleus | 60.29 | 40.1 |
| PGSC0003DMT400001613 | Potato | nucleus | 60.29 | 39.61 |
| Zm00001d044836_P001 | Maize | nucleus | 51.84 | 39.5 |
| KRH54542 | Soybean | nucleus | 59.19 | 39.46 |
| KRH63357 | Soybean | nucleus | 57.72 | 39.45 |
| KRH03466 | Soybean | nucleus | 58.82 | 38.74 |
| Solyc06g070900.2.1 | Tomato | nucleus | 58.46 | 38.22 |
| KRH56919 | Soybean | nucleus | 58.46 | 38.22 |
| GSMUA_Achr10P... | Banana | nucleus | 29.04 | 33.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.57 | 33.04 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 34.56 | 32.53 |
| GSMUA_Achr6P36470_001 | Banana | nucleus | 44.12 | 31.58 |
| Bra018126.1-P | Field mustard | nucleus | 53.31 | 31.12 |
| GSMUA_Achr11P... | Banana | nucleus | 32.72 | 31.01 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 23.9 | 30.66 |
| GSMUA_Achr11P... | Banana | nucleus | 27.94 | 30.52 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 26.47 | 29.51 |
| AT3G47620.1 | Thale cress | nucleus | 52.57 | 29.24 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 21.69 | 29.21 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 31.25 | 28.91 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 30.15 | 28.57 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 30.15 | 27.06 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 18.01 | 25.93 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 29.41 | 25.16 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 21.69 | 24.89 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 19.49 | 24.09 |
| GSMUA_Achr11P... | Banana | nucleus | 19.49 | 23.45 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 17.28 | 22.27 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 27.57 | 21.87 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 29.04 | 20.36 |
| GSMUA_Achr10P... | Banana | nucleus | 29.41 | 19.8 |
Protein Annotations
| MapMan:15.5.19 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G00500_001 |
| EnsemblPlants:GSMUA_Achr4P00500_001 | EnsemblPlants:GSMUA_Achr4T00500_001 | InterPro:IPR017887 | UniProt:M0SJW7 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002955AB4 | SEG:seg |
Description
TCP-domain protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G00500_001]
Coordinates
chr4:+:384752..385828
Molecular Weight (calculated)
28955.1 Da
IEP (calculated)
8.882
GRAVY (calculated)
-0.461
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEAGGSRR PNFPLQLLEK KEEDSCSSSA YPSLAISSTT AAAELAVDRL RKPPPKRTSN KDRHTKVEGR GRRIRMPALC AARVFQLTRE LGHKTDGETI
101: EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSVSV PSHLRAANYF NSVAAALPGT SLRIHNEWEH MVGGNSQSIW TFPQVGSTTM FRGSMSSGLH
201: FMNFPTPMAL LPSQQLGLGS GGGGGGGGEG HMGIPSALNM YRSPSTSEAM PSASQQGHRD CERHDTMSTS DS
101: EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSVSV PSHLRAANYF NSVAAALPGT SLRIHNEWEH MVGGNSQSIW TFPQVGSTTM FRGSMSSGLH
201: FMNFPTPMAL LPSQQLGLGS GGGGGGGGEG HMGIPSALNM YRSPSTSEAM PSASQQGHRD CERHDTMSTS DS
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.