Factsheet for GSMUA_Achr9P01140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P21020_001
GSMUA_Achr4P22520_001
GSMUA_Achr8P20610_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P25550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P17620_001	AT4G02570.1	15992545
AT3G26810.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08000_001	Banana	cytosol	83.3	83.3
GSMUA_AchrUn_...	Banana	cytosol	83.11	83.11
GSMUA_Achr6P20580_001	Banana	cytosol	77.86	83.0
GSMUA_Achr6P16510_001	Banana	cytosol	82.36	82.36
GSMUA_Achr10P...	Banana	cytosol	81.61	81.61
VIT_14s0068g01330.t01	Wine grape	cytosol	74.67	69.58
Os04t0395600-01	Rice	cytosol	74.86	69.39
TraesCS2D01G285000.1	Wheat	cytosol	74.67	69.34
TraesCS2A01G286200.1	Wheat	cytosol	74.48	69.16
HORVU2Hr1G070800.1	Barley	cytosol	74.48	69.16
TraesCS2B01G302900.1	Wheat	cytosol	74.3	68.99
HORVU6Hr1G021040.2	Barley	extracellular	18.01	68.57
KRG94665	Soybean	cytosol	72.8	67.83
Zm00001d003911_P003	Maize	cytosol	72.8	67.48
KRH06858	Soybean	cytosol	72.05	67.13
KXG26136	Sorghum	cytosol	73.73	66.27
Zm00001d025268_P001	Maize	cytosol	70.92	65.97
AT3G26810.1	Thale cress	cytosol	69.79	64.7
KRH70053	Soybean	cytosol	69.04	64.22
Bra032954.1-P	Field mustard	cytosol	69.23	64.17
CDY34211	Canola	cytosol	69.04	64.0
CDY28523	Canola	cytosol	68.86	63.83
AT1G12820.1	Thale cress	cytosol	69.04	63.78
Bra026953.1-P	Field mustard	cytosol	68.29	62.98
CDX71968	Canola	cytosol	68.29	62.98
CDY16034	Canola	cytosol	68.29	62.87
CDY26594	Canola	cytosol	67.73	62.46
CDY31282	Canola	cytosol	68.48	62.18
KRH08397	Soybean	cytosol	66.42	61.78
Bra016754.1-P	Field mustard	cytosol	68.29	61.69
CDY21068	Canola	cytosol	67.92	61.36
GSMUA_Achr5P26930_001	Banana	cytosol	52.35	60.13
HORVU5Hr1G075620.2	Barley	cytosol	62.66	58.8
Os11t0515500-01	Rice	cytosol	62.66	58.8
TraesCS5A01G281100.1	Wheat	cytosol	62.48	58.52
TraesCS5D01G288000.1	Wheat	cytosol	62.29	58.35
TraesCS5B01G280100.1	Wheat	cytosol	62.1	57.87
GSMUA_Achr3P23850_001	Banana	cytosol	61.73	56.53
EES09791	Sorghum	cytosol	60.79	56.06
Zm00001d007357_P005	Maize	cytosol	59.1	54.97
GSMUA_Achr3P06710_001	Banana	cytosol	50.66	47.12
GSMUA_Achr5P05520_001	Banana	cytosol	51.41	46.68
GSMUA_Achr7P11780_001	Banana	cytosol	51.41	46.44
GSMUA_Achr5P28930_001	Banana	cytosol	30.77	29.29
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	30.77	28.13
GSMUA_Achr9P03690_001	Banana	cytosol	30.77	27.2
GSMUA_Achr8P02350_001	Banana	cytosol	8.07	25.0

Protein Annotations

EnsemblPlants:GSMUA_Achr9P01140_001	EnsemblPlants:GSMUA_Achr9T01140_001	EnsemblPlantsGene:GSMUA_Achr9G01140_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	PFAM:PF13516	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000295AD8B	UniProt:M0TWH1	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:

Description

Transport inhibitor response 1-like protein Os04g0395600 [Source:GMGC_GENE;Acc:GSMUA_Achr9G01140_001]

Coordinates

chr9:+:878498..880780

Molecular Weight (calculated)

59412.8 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.022

Length

533 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFDFLVSHR DRNAVSTGKP HFADFNLVPH DWGGFALPWI EAAAHGCPGL EELRLKRMVV SDESLELLAR SFPDFKALVL ISCEGFSTDG
101: LAAIATHCRS LRELDLQENE VEDYGRQWLS CFPDSCTSLV SLNFSCLKGE VNAGALERLV ARCPSLRGLK LNRAVSVESL TRILDRAPHL VELGTGSLTV
201: DRHTEAYRRM INAFRKCKSL RNLSGFWDVD PLCLQSVYPI CPNLTVLNLS YAPSIQGADQ VKLIRHCFKL QKLWVLDCIG DKGLAVVAST CKQLQELRVF
301: PSDIYGTGTA AVTEEGLVAI SSGCSKMNSL LYFCCQMTNA ALITVAKNCP RFIRFRLCIL DPGKPDPITN QPLDEGFGAI VQSCKDLRRL SLSGLLTDKV
401: FLYIGEYAAR LEMLSIAFAG DSDKGMIYVL NGCKNLRKLE IRDSPFGDAA LLENVGKYET MRSLWMSSCD VTLGGCKALA AKMPRLNVEV INEWDESVEM
501: EENPSDTHKV EKMYVYRTLT GPRNEAPDFV WTL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.